G626417


Basic Information

Item Value
gene id G626417
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56482394 ~ 56485304 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU712312
CCAAAGCAAAACCAGAATGCCAGTTTCCCCTGCCCAGTCAGCCAGTTTCAGTCCCATACAGTGACATGGGGGAGGGGGACAGTCAAAGAGGGGACAACACACCACATTATCTGCAGACAAGCTCTTTGGCGTGTCGGCTGgacaataaaaacaaaaataaaacaattgattAGGATGAAGGCAAActctggcagacagagagagagaaagtcggGTCTGTTCAAGGTTATGCCAACGGATCTCCTCGATGGTATTTCTGAGTACCATTAGAAGGTAGTTATCTCCATGGAAATTAAAGACCATGAAGGAAAATACCCTTCTCTTGTGGTATTTGGGTTTGGCTGGGGACCAGTACTACAGGCCATCTTCACATTCACAAAAAGCACAATTAAAACagaataaaatcaaataaatcacCTCTCAGTCTCTGGTTCCAATTTCTATAGGTTAAAAAAGAGAAACCAATTCCAATCAATATACAAATGGCATAATATAATTGTACATGTTGTTCTCAGGTGAAATTTGAACAGTTCTTCACACAAAGAAAAGTATAGAATATGTCTCCCCACTGGTCGTACACTTTCACACTAGAGGCTTAAATACTTTCATATTTAGATGGCTGTTAGAGGAAAAAGGTACTTTTggaataaaatcaaataaaaaaggaCAAATACATTTAAGTGGCTTAGTGGCATAAAACATATGAAATAAAACTCATTTCATAAATTATTTCATGTACAAAGTCAATAAAATATAGGTTCCAGTGCTTTGGGAGATAAAAAACAACTATAAACAAGAATACAAACAAATACCTTTTAAATCATCATGTTTCTTCCTGTTTTTCTTTACTGATCATAAGccatatcaaatcaaagtgttaCCCCTAGTCCCTCATCCAAACTCATTTGTTACccgttagtttattcatgtattgTACAGCCGTAGTTTGGCTTCTACAGGGTTGGTTTGGTTTGTACCTGGTGAGTGTGTGTAGTTTTATCTGGCTGACCCAAAGCTGGCAGTTCTACAAGCACAAACCGGGTGAGGTACTGAAGTCTCGCTCAAAGTGTTGATTTGAACACAGCCTAATGGCACACtgctttgtgtgcgtgtgtgtgttaggctGGTGCTGTGTTTTTACAGTGTGGAATACGACACTACAGACCAATCTATTTGACTGCTCCTCTATCTCCTAACTACAAACTacaacagggatcatcaactagattcagctgcgggcCAATTATTTAttgagtggatggtcagggggccagaacataattacaaagaaTTTGTAGACTGctaattgactgcaagaagcccaaacagatatcaaaacataatttcaaacctttcttacatttgtatacgatcacatctaTTACGCTTGGGAATACTTTTATTTTACTACCCCTAAAATTACTTGGAGCTGATTTTCTGGCATTTAACAGTCTTTTATGTaaacaatcatttaaaaaaaaaaagtgtctcgGAAAACTTGCGGGGTATGTATGTAGCAcaggccgccagttggggaaccctgcactACAATATACTAAAACACAACCCACTCCTTCACTCTCCACCCAGATAGAGTGGGGCTTCAGGTGGCTAACACAAGGCACGTTGGCAGGTTAAGGACTGGGCTACAGAAGATCCTGAGTCGCTACGTGGAATTACTTACACTGTGGAGCGACATAACCTCTTCAATCGCTACACTATCTCACAATGCAGGGCCAATCCATCTCTCCTCAACATTcacacaggggtcagaggtcatggaGTAGACTTGGCAGTACCCTAAAGGCTAAAGGTCATAGATCACACAGGAGATGGCAGTACCATAGAGGTCATGGCAGTGTGTTTTACAGaagaacggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaaaccgtTGGCAGTCCCTCACATATTTCCCTTCAAATAACAGGGGCCCTTCTGCGTTAGAGTGAACAAGAAGCGGTCTGTGCTcgttgtgtatttgtgtgtgtactaGATTGTGTATCATTTAGAGGTGCTCTGATATTTACAGTGGTAGGGAACAACTATTGCAATCCGAAACATGGGTTTGGTTTCTCATATTGCTGTTGAATGTGAGTGTTAAGGGTGTGCATCCATGAgaattttgagtgtgtgtgtttaagtatgtctcagtgtgtgtacagtgtctaCGCGAGTGCTTACAGTGTATGTGAGGGCGTCTGGAGTGCATATGTAGCAGGGTTGAGGAACAGAGCAAAAGCATATATCACAGTATATCTGTGCGGTGTTCTGTACGTACCAtatgtgcctgtgtctgtgtgtgtgtgtgtgtgtgtgtCCTCTATGCTGAAGCTGGATCTGCGGCTGGAGTCAACCGAGGCCTCAGGGGACatggcagagagcagagggtctCCACCTAGAGGAGACAGGGGCTCGTCCATCATCAGGAAGCCCAGGTCGCCTCTCCTTCCCTGGGTACCAAGGAGGCCAAGCTCCCCTAGCCCTGACAAGCCCTCCGGGTAGCCAGGAACCCCGTCACACAAGTCCAGCGACTGGGCAAAGTCAAAGGGCTGAGAGCTGCCCACAGCTGGGTACTGGAGGGGAAGTTGGGGctggaggtgaggggggagaggaggcagCTGTCTGGGCTGGCCCTGCTGGGGCTGAATGTGGTGGGACTGGGggtggtggaggtgttgttggCCCTGGGAAAGAGCTTGGTGctgggcctgctgctgctgctggagctTCTCCTCAGGGCTGGTTTCCTGTTTAATGTAGGAACCCATCAGGTCCCCAGAACCCATCCCAGATGGAGAGGAGCTGGGGAGGCCGTGCAGACGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU712312 True 2850 TUCP 0.45 3 56482394 56485304

Neighbor

gene id symbol gene type direction distance location
mdfi LOC106583052 coding upstream 106332 56375199 ~ 56376062 (+)
foxp4 LOC106583051 coding upstream 186535 56107667 ~ 56295859 (+)
LOC110528971 LOC106583048 coding upstream 684110 55792291 ~ 55798284 (+)
LOC110528024 LOC106583050 coding upstream 767681 55711635 ~ 55714713 (+)
LOC110528022 LOC106583050 coding upstream 974228 55505406 ~ 55508166 (+)
ppfia4 LOC106583137 coding downstream 120588 56605892 ~ 56716813 (+)
LOC110528029 mdm4 coding downstream 265500 56750804 ~ 56766586 (+)
LOC110528032 LOC106583134 coding downstream 331977 56817281 ~ 56842143 (+)
LOC110528976 LOC106583066 coding downstream 363202 56848506 ~ 56849449 (+)
LOC110528036 LOC106583132 coding downstream 533241 57018545 ~ 57029242 (+)
G626400 NA non-coding upstream 56420 56425734 ~ 56425974 (+)
G626323 NA non-coding upstream 112885 56342181 ~ 56369509 (+)
G626310 NA non-coding upstream 158453 56323740 ~ 56323941 (+)
G626300 NA non-coding upstream 172395 56309737 ~ 56309999 (+)
G626096 NA non-coding upstream 219762 56262153 ~ 56262632 (+)
G626468 NA non-coding downstream 40078 56525382 ~ 56525723 (+)
G626531 NA non-coding downstream 127165 56612469 ~ 56637545 (+)
G626528 NA non-coding downstream 203465 56688769 ~ 56690335 (+)
G626594 NA non-coding downstream 243096 56728400 ~ 56728632 (+)
G626598 NA non-coding downstream 252657 56737961 ~ 56740360 (+)
G626004 NA other upstream 403465 56071054 ~ 56078929 (+)
G625222 NA other upstream 1009551 55472468 ~ 55472843 (+)
G625038 NA other upstream 1268483 55211705 ~ 55213911 (+)
LOC110527126 LOC106582962 other upstream 1274131 55207615 ~ 55208708 (+)
snrpe ruxe other downstream 834398 57319669 ~ 57323047 (+)
G627035 NA other downstream 1057578 57542882 ~ 57596051 (+)
LOC110528055 LOC106583107 other downstream 1432730 57917801 ~ 58055214 (+)
LOC110528980 LOC106583093 other downstream 2018246 58502198 ~ 58589001 (+)
G628468 LOC106583084 other downstream 2222991 58708295 ~ 58713584 (+)

Expression


Co-expression Network