G627175


Basic Information

Item Value
gene id G627175
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56495308 ~ 56496632 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU713155
ctcacggtgtgtcgctctctctcacacggTCGGTCTTGctctcaataataataataataatagagataatagtataatactaataataagtaagttactatGCAGAttttattcagtgtccctcaggctatggcaggcaaatacatatttggctggaAGAGGAGCCGTGGCTCCTTCTCCCATGAGTAtgtttagtttttcctctgggtttaatAAGTTAACATTTGTAATAAATGTAGTAAtatctgtgaataatgaatctcttggtGAGGAATATTTCTCACAGTAacggagaaagtgcatctctgtttctacctcccctgtcgcacagtgaccacatacacgctcctctttgggtagccatgtctttacatctctgtctctacctcctctgtcgcacagtgaccacatacacgctcctcctAGTGTAGCCATGtttttttatgtctgccggtttctattgccaattggtggtcactcagcctgtacatggtaaggatctgtctctgcttcgtatctctgacagagtagagataatcagccaattcatattctctgtttagggtcagatagcagtttagtcggctttgggatttatTTTTTTCGTTTTTCCAATGTTGTATATATGTCctttgattttgtttattggaattctttcttttgaagcagtgctggtgtcagcttggttggtgaggtccaacaccagctgactgagagggctcgtttctgggctcagctcttgggtttggtcagtagtgtgatggtgtttattaattagtgtgtgtaaggtgtatataggGTCAGTAGTGAGAtggtgtttattaattagtgtatGTAAGGTGTATATAgggtcagtagtgtgatggtgtttattaattagtgtatGTAAGGTGTATATAgggtcagtagtgtgatggtgtttattaattagtgtatGTAAGGTGTATATAGGGTCAGTAGTGAGAtggtgtttattaattagtgtgtgtaaggtgtatatatggtcagtagtgtgatggttagggagaaagccaatttgacatttacttattacagtGGTTTTCTTGAAGAAaagtttgaattcttgaattctaaatgctACAGAAACCCTTTCTCAAGTTACTGTttacgcaaattcccctgtaattattggggtctgatttgtctccacttttgtggttaggggagatgagcccctggttccagacatcagggaagtagcc

Function

NR:

description
PREDICTED: uncharacterized protein LOC104955046

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU713155 True 1223 lncRNA 0.40 2 56495308 56496632

Neighbor

gene id symbol gene type direction distance location
LOC110528023 errfi coding downstream 760287 55727429 ~ 55735021 (-)
pax7b pax7b coding downstream 796000 55620553 ~ 55699308 (-)
LOC118965301 NA coding downstream 845436 55644983 ~ 55649872 (-)
LOC110528021 dj-1 coding downstream 923581 55567122 ~ 55571727 (-)
LOC110528020 LOC106582955 coding downstream 928320 55420466 ~ 55566988 (-)
tmem183a tmem183a coding upstream 102611 56599243 ~ 56604594 (-)
myog tmyogenin coding upstream 220244 56716876 ~ 56720187 (-)
mdm4 mdm4 coding upstream 260434 56757066 ~ 56772426 (-)
sort1a LOC106583135 coding upstream 276183 56772815 ~ 56796604 (-)
psma5 psma5 coding upstream 300216 56796848 ~ 56806013 (-)
G627172 NA non-coding downstream 3352 56491664 ~ 56491956 (-)
G626402 NA non-coding downstream 68349 56426750 ~ 56426959 (-)
G626384 NA non-coding downstream 95994 56399103 ~ 56399314 (-)
G626379 NA non-coding downstream 100737 56394347 ~ 56394571 (-)
G626369 NA non-coding downstream 107653 56387434 ~ 56387655 (-)
G627281 NA non-coding upstream 252093 56748725 ~ 56750461 (-)
G627295 NA non-coding upstream 317965 56814597 ~ 56814801 (-)
G627300 NA non-coding upstream 320670 56817302 ~ 56817561 (-)
G627305 LOC106583134 non-coding upstream 326488 56823120 ~ 56823415 (-)
G627306 NA non-coding upstream 328093 56824725 ~ 56825042 (-)
G625472 LOC106582968 other downstream 1323108 55164492 ~ 55188756 (-)
G625426 NA other downstream 1419912 55072479 ~ 55075396 (-)
G622985 NA other downstream 3172477 53305536 ~ 53322831 (-)
G619733 NA other downstream 5536768 50956271 ~ 50958540 (-)
G627254 NA other upstream 194691 56691323 ~ 56696091 (-)
G627314 NA other upstream 337953 56834350 ~ 56835092 (-)
G627323 NA other upstream 350330 56846962 ~ 56852301 (-)
vamp3 vamp3 other upstream 356935 56853567 ~ 56869607 (-)
LOC110528040 NA other upstream 555559 57052191 ~ 57059527 (-)

Expression


Co-expression Network