G626528


Basic Information

Item Value
gene id G626528
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56688769 ~ 56690335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU712439
ctctctctctctctctctctctctctctctctctctctctctgtgttctccctcgaccgctctctttctctcttaagcacacacacagatccaaGGCACACTCTCTTTCTGTTAAAATGTCTCTTACTTGTTCATTCAATAATTtgttccctctatctttctctctctctctccctttctcctgtccTCATCTGTTCAACTAGAATCCATTACAAAGGCAAATTAAACTAAACATTCAGTACAAGCTGTGCTGTGCACAGGAAAACCCAAATGGGATCCAAAATAACAACTTGTTAGGTTCATTTTTTGGTCCTGTACTGTGTGTTGCACCTTTCACCCACTGTCTCCCCAACTCACTGGagcatagaatagaatagaacagaatagaatagaacagaatagaatagaacagaatataatataacagaacagaatagaacagaatagaacagaatagaatagaacagaatagaaaagaacagaatagaatataacagaatagaatataacagaatagaaaagaacagaatagaatagatcagaatagaatagaacagaatagaatagaacagaatagaacagaatataatagaacagaatagaacagaatataatagaacagaatagaacagaatagaatataatagaatagatcagaatagaatagaacagaatagaacataatagaacagaatagaatagaacagaatataatataatataatataatagatcaggatagaatagaacagaatagaatagaacagaatagaacagaatagaatataatagaatagatcaGAATAGAATAgatcagaatagaatagaacagaatagaacagaatagaatagaatagatcaGAATAGAATagtacagaatagaatagaatagaatagaacagaatagaacagaacagaacagaacagaacagaatagaatagaacagaatagaatagaatacaacagaatacaacagaatagaacagaacagaatagaacataacagaatagaacagaaatgCAGTTTTCACAAACTGTTTGAGATAAGAATTTTAATGGCCACAATATCGCCAGGAAAACACATTGTATTTTCTCTCAGATTATTATAGAAGCAGTACTAAAAGAGTAAGGAAGTTTAGAGCAACGTTTAGAGAAACGTTCATTGCCCATTCCACAGAGTTCCCTGAATATTCCTGAAGTGTGTACCTGGTGCTGTGATGTTCCTGTGTGAAGTGATGGGATGGGGAGTCTTGGGCCTGCAGCAGCCAGGAACATCTGTCTCAACTGGGGACAGTCACAGCCTGTTAGAACTCTGGAACTGGGATCAGCACTTCCATTGGTGCTGCTGTAGGAAGCTGTAGAATAGATACACAAAGAGATATGGAAGGACAGGTAGATAGAGGAGGCATAGccatctcactcccacacatTCTGAGGGACCAGAGGGCCTCACCAGGACAACAATATCACATCTAA

Function

NR:

description
keratin-associated protein 4-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU712439 True 1477 lncRNA 0.36 2 56688769 56690335

Neighbor

gene id symbol gene type direction distance location
mdfi LOC106583052 coding upstream 312707 56375199 ~ 56376062 (+)
foxp4 LOC106583051 coding upstream 392910 56107667 ~ 56295859 (+)
LOC110528971 LOC106583048 coding upstream 890485 55792291 ~ 55798284 (+)
LOC110528024 LOC106583050 coding upstream 974056 55711635 ~ 55714713 (+)
LOC110528022 LOC106583050 coding upstream 1180603 55505406 ~ 55508166 (+)
LOC110528029 mdm4 coding downstream 60469 56750804 ~ 56766586 (+)
LOC110528032 LOC106583134 coding downstream 126946 56817281 ~ 56842143 (+)
LOC110528976 LOC106583066 coding downstream 158171 56848506 ~ 56849449 (+)
LOC110528036 LOC106583132 coding downstream 328210 57018545 ~ 57029242 (+)
fbxo2 LOC106583126 coding downstream 356165 57046500 ~ 57052885 (+)
G626531 NA non-coding upstream 51224 56612469 ~ 56637545 (+)
G626468 NA non-coding upstream 163046 56525382 ~ 56525723 (+)
G626400 NA non-coding upstream 262795 56425734 ~ 56425974 (+)
G626323 NA non-coding upstream 319260 56342181 ~ 56369509 (+)
G626310 NA non-coding upstream 364828 56323740 ~ 56323941 (+)
G626594 NA non-coding downstream 38065 56728400 ~ 56728632 (+)
G626598 NA non-coding downstream 47626 56737961 ~ 56740360 (+)
G626599 NA non-coding downstream 58804 56749139 ~ 56750289 (+)
G626633 NA non-coding downstream 124691 56815026 ~ 56815498 (+)
G626417 NA other upstream 203465 56482394 ~ 56485304 (+)
G626004 NA other upstream 609840 56071054 ~ 56078929 (+)
G625222 NA other upstream 1215926 55472468 ~ 55472843 (+)
G625038 NA other upstream 1474858 55211705 ~ 55213911 (+)
snrpe ruxe other downstream 629367 57319669 ~ 57323047 (+)
G627035 NA other downstream 852547 57542882 ~ 57596051 (+)
LOC110528055 LOC106583107 other downstream 1227699 57917801 ~ 58055214 (+)
LOC110528980 LOC106583093 other downstream 1813215 58502198 ~ 58589001 (+)
G628468 LOC106583084 other downstream 2017960 58708295 ~ 58713584 (+)

Expression


Co-expression Network