Gene
RNA
| Item | Value |
|---|---|
| gene id | G626638 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 56828573 ~ 56829035 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| protein phosphatase 1 regulatory subunit 12B-like isoform X5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU712574 | True | 463 | lncRNA | 0.53 | 1 | 56828573 | 56829035 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110528029 | mdm4 | coding | upstream | 69350 | 56750804 ~ 56766586 (+) |
| ppfia4 | LOC106583137 | coding | upstream | 111760 | 56605892 ~ 56716813 (+) |
| mdfi | LOC106583052 | coding | upstream | 452511 | 56375199 ~ 56376062 (+) |
| foxp4 | LOC106583051 | coding | upstream | 532714 | 56107667 ~ 56295859 (+) |
| LOC110528971 | LOC106583048 | coding | upstream | 1030289 | 55792291 ~ 55798284 (+) |
| LOC110528976 | LOC106583066 | coding | downstream | 19471 | 56848506 ~ 56849449 (+) |
| LOC110528036 | LOC106583132 | coding | downstream | 189510 | 57018545 ~ 57029242 (+) |
| fbxo2 | LOC106583126 | coding | downstream | 217465 | 57046500 ~ 57052885 (+) |
| wnt4a1 | wnt4a1 | coding | downstream | 382605 | 57211640 ~ 57240084 (+) |
| snrpe | ruxe | coding | downstream | 490634 | 57319669 ~ 57323047 (+) |
| G626633 | NA | non-coding | upstream | 13075 | 56815026 ~ 56815498 (+) |
| G626599 | NA | non-coding | upstream | 78284 | 56749139 ~ 56750289 (+) |
| G626598 | NA | non-coding | upstream | 88213 | 56737961 ~ 56740360 (+) |
| G626594 | NA | non-coding | upstream | 99941 | 56728400 ~ 56728632 (+) |
| G626639 | NA | non-coding | downstream | 1154 | 56830189 ~ 56830464 (+) |
| G626640 | NA | non-coding | downstream | 1852 | 56830887 ~ 56831100 (+) |
| G626642 | NA | non-coding | downstream | 5319 | 56834354 ~ 56834678 (+) |
| G626645 | NA | non-coding | downstream | 6613 | 56835648 ~ 56835859 (+) |
| LOC110528032 | LOC106583134 | non-coding | downstream | 7750 | 56817281 ~ 56842143 (+) |
| G626417 | NA | other | upstream | 343269 | 56482394 ~ 56485304 (+) |
| G626004 | NA | other | upstream | 749644 | 56071054 ~ 56078929 (+) |
| LOC110528024 | LOC106583050 | other | upstream | 1113862 | 55711635 ~ 55714713 (+) |
| G625222 | NA | other | upstream | 1355730 | 55472468 ~ 55472843 (+) |
| G625038 | NA | other | upstream | 1614662 | 55211705 ~ 55213911 (+) |
| G627035 | NA | other | downstream | 713847 | 57542882 ~ 57596051 (+) |
| LOC110528055 | LOC106583107 | other | downstream | 1088999 | 57917801 ~ 58055214 (+) |
| LOC110528980 | LOC106583093 | other | downstream | 1674515 | 58502198 ~ 58589001 (+) |
| G628468 | LOC106583084 | other | downstream | 1879260 | 58708295 ~ 58713584 (+) |
