G627316


Basic Information

Item Value
gene id G627316
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56840579 ~ 56842129 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU713313
GTAGATCTTTATTGTCCCAATAAGCTATTTGTTATGTAGACAAGGAGACATGATACAGGAAAGTGTCAACTTAACGGATATAAGGGATTCAGTCCATTAACGATACAATACAATAGTAACATAAAGCATCAGAGTACACAAATACAAACAGTTCATAATGTGCAATGCAATGGCTTATTTATTAGAAAATTACACTTGTATCACTTTATTTTATTCTGTTTAGCCAGGTAAGTCATTGAAAACTAGTTatattttacaatgacgacctagtcAGTCAAAAGGTGACTGTACAATACACCAATATAGTCATGTGATGGCAGTATGATCACTCACAATAGGTTTTTATTAACaattactgtatatactgtagttgcGAATGTGAAGCGGAGTAGGATCAAGTTGCCCGTACACAACAGATCTATGGCCAGTTATGCATTGTTCCCTCTTAATGGTTAATGTTGGGATTGTACGTTGATCCTAGGTCTGTGTCTAAGGATAACTTATATCTGTAGCGTGTAATGCTGTCTGAAGAAGTCATGGTCTTCACTCCCCTCTAGAGGGTTCAGTGGTGCTGAGAGAACACAGGTGCCTGCCTCATAGGGACTGGAGTTACCCTAACCATCTAACCTAACTTGGGAAAAACTCTGGGCTTCGGTAACCCTGTCATTTAAACCCTGTGCATCTTTGTAAATAAATACCTTCCCACAACAGCAGTTTTTGCAACCAATGACATAATTGTAACAATAAGAAGGTAATAGTATTGCTGTTTAACTGTTTAAAGGCGCCCACGTACTAGGTTCGctttgctcctagcagaactcggctAAGTTAAGCAAACGTCTGTACCtcacatactcccttaaaagaccttcgcttgaaaaacaagaaaaaaacacGAGACGCCGAAGCAACAacatagccagtatacacttcctcaaaatagtcagaattaatcgAAGATAAATCCAGAAATCTGTAATAAATTGGCGTTTTGGACGAGGAGATCTTAGTCGCGTGAaaaaatgacaacaaacacttctTTCAAGAATCCCTTCAATAGTTCCCATTCCTACTAGGAGTAGTTaagttgaccaatcaccgacaaaAAGGGTGTAGACTTCGACTACCGAACTTTGACTTGCCTcaagaaaatgttttgtgtgcaTGAACCTGCCGAACATCAAAACGAACAAAAACGTCACAAcatgttgtcataatatatgctCAAACTGTTTCACCTGTGAAGCATACAGTAAGATTTACAATCCCATTGTGGTTATCAAATGTGAGTGAAGGGTCTAACTTGAGGTGGAATGTAGAGGTGGGACTAGTGGAGGAGAGTGGACATCCCTACAGTACACTGAAACACCAGTAGCTGAGGGCCTAGGGGTTGGTTTGGAATGCAACCTGTGTCTGTAGCGTCTGCCTCTGGACCAGCCAGCGGCAAGCTGACTCCCCTCTCATTTCCAATACACCTTCTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU713313 True 1483 lncRNA 0.40 2 56840579 56842129

Neighbor

gene id symbol gene type direction distance location
psma5 psma5 coding downstream 34566 56796848 ~ 56806013 (-)
sort1a LOC106583135 coding downstream 43975 56772815 ~ 56796604 (-)
mdm4 mdm4 coding downstream 68153 56757066 ~ 56772426 (-)
myog tmyogenin coding downstream 120392 56716876 ~ 56720187 (-)
tmem183a tmem183a coding downstream 235985 56599243 ~ 56604594 (-)
vamp3 vamp3 coding upstream 11682 56853567 ~ 56869607 (-)
LOC110528035 LOC106583131 coding upstream 39202 56881331 ~ 57017276 (-)
phf13 LOC106583125 coding upstream 196295 57036803 ~ 57046463 (-)
LOC110528040 NA coding upstream 214275 57052191 ~ 57059527 (-)
cdc42 cdc42 coding upstream 425313 57267442 ~ 57305408 (-)
G627314 NA non-coding downstream 5487 56834350 ~ 56835092 (-)
G627313 NA non-coding downstream 6287 56833973 ~ 56834292 (-)
G627311 NA non-coding downstream 9475 56830524 ~ 56831104 (-)
G627310 NA non-coding downstream 10146 56830063 ~ 56830433 (-)
G627308 NA non-coding downstream 11543 56827192 ~ 56829036 (-)
G627342 NA non-coding upstream 54122 56896251 ~ 56896997 (-)
G627343 NA non-coding upstream 55963 56898092 ~ 56898535 (-)
G627346 NA non-coding upstream 62271 56904400 ~ 56904778 (-)
G627408 NA non-coding upstream 142215 56984344 ~ 56987712 (-)
G627432 NA non-coding upstream 179760 57021889 ~ 57022773 (-)
G627254 NA other downstream 144488 56691323 ~ 56696091 (-)
LOC110528020 LOC106582955 other downstream 1406507 55420466 ~ 55566988 (-)
G625472 LOC106582968 other downstream 1668379 55164492 ~ 55188756 (-)
G625426 NA other downstream 1765183 55072479 ~ 55075396 (-)
G627323 NA other upstream 4833 56846962 ~ 56852301 (-)
G628575 LOC106579815 other upstream 1029921 57872050 ~ 57873331 (-)
G628714 NA other upstream 1275061 58117190 ~ 58118122 (-)

Expression


Co-expression Network