G626671


Basic Information

Item Value
gene id G626671
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56881338 ~ 56886168 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU712609
CAAATTTTCTTTTTACTCAGATTTCATTTTACAGCAGAAATTATGTAAAGCATTCAAAGTACATGTTCCACATATAAGGGCAATTCAAAACACTGTGCATGGCCTCAGCAGCAGAAGGTTCTTTTTAAAAACATATTCAACTATTTATTGATGCGTATACATGCACATTATTAAAAAAATCACTTACaaaagagggaaagaggtagaaagagagagagagaaagagagagaaggggcatgAAGAACACAAAATAGGAGGGAACAAAGCTAGGgatgagagaggaaaagagaaagagagggagaagtctAGCTAGCACTATTTAAACATGCAGTGTGATGTTAGCCCATAGCCCGTTATAACTATGGCCTGTATTTCAAAATCTATCTCTTATTTGACCTTTAACCTGTGTGTCAAAGGTCACCTCTGTGCAGCTTGCCCAGGAGCGAGTTCAGCAGGGCGCAGCGTTTTGTtatgttcagatagaaatatggcatgtagaacaaacatgcctctctgacatgtagaataaggaatcacGTCAGCTATATTCAtagcatttctatctgcaacgttcggCTACTGACTGTGGCCCACTTTCCAGAAGAGGAAGTCAAAGTTGCCTGTGACATAGCTTATGTTTTTCTCTATAAACTGATCTCTACGCTTACTTAAATTTACAGATCATTATTTAGAAAATGTATATGTTTGTTTAttgctctgtgtgtttcagtggaaAGCCTTATCCAGTGTGAATTCACCCCCTTTAAACAGCAGcgcctctctgtgtttctgttagTGTAGCTGTGATGTGGTTGGAGGGCACAGTTCCAGGCCAGGGTATAAAATGATTAAGCGCATTCAAGAGTTGACTACAGAGTGAAACAGCGATAGGCTGGAGAGCCTTTCCAACATGAATAATTCCTGGGCCATAATGACTatgcccagagtttttcctggtcaggaaaACCACTCCGGGCCCTAGAGAGGATATTATTGTCTTCTTTGTGAGGCTCTACATATATTTGAATGTTTGtattatatatgttatatgttgtgtCTCAGGTGTTTGGAAGTGGAAGTCCTTTATAGATGGGATGATGTGTGTGGCACCCATCTCAGGCCAACTCCCTGTGAACAAGACCTCAGGCTGCCACATCTCTGTGGGGTCATCGCCACTGTCATCTTATGAAAGAGGTATAGCCTAATCACAATTGGctgattgacacacacacacacgcgcgcacacatgcacacacagggcCTACTCCACACCCCCAAGCCATTCTAGAACCCTGAGTTTAAATCTGAGGGAGTTACTGCTCCCTaagaaaaaagaaaagagagagagtgtgatgtGTGTGCAAGATTGGAGATTGTGAGACGACCGAGTGAGTCGTGTGCATGTCTCTGTCTGTGAGTGTGAAGTTTGCTCCAGCTAAGATATGTTTTTATGTAAGAACGTTGGAAGAACATTACTGCCAGGACTGAACAGATGATAAATAAAGTGAAATGTCATGCAATTTCCATGCAGAAGAATACACTTTATCAATGTTCAAAACAGATATTTGCATCTTGAGAATGACCATACAGCAGTTGAATTCCAGAAAGAGGGTTTCTTGTGCTCTACATCTCACTAAAGACTTAACCCAGGGTATCTATATGAGAGTGTCTAGGCCTACATGTACTGCCATTACTGTAAAATGGGTGTGAATGCGCCATGCAAAATTTAGCCTATAATATATCAACCAGCCCAGTCAGAGATATGGCATAATCTGGCAACCTAACTGAGATCCCAATGAGGATTGAAACGTTGTCAATGTTTCCTTCTCACAAATAAATATATGTAGGGGGCAAATCAGAGCtacggataaaaaaaaaaaaaatgtagcaaCCCAAATGAACCATGGTAATGTATGCTGGGATCCACTACTCAGTCTCTACCTGGTAGGAGGAGGAAAATACATTATCTGCTTAGAGGACCAAGAGCAGGACTAGTATCAGTCTGTTTCTGCTATAGCCAACTTGTCTTTTAACAATGGAATATTTTGAATGCATAAACACTTAGGTATAGGAAGAACAACCAAAATCACTAACCAATTAGAGTTCAAAATAAGACTGGGTGCCAATCGTTTGTGTAGAATAATCATCACACACAGTTTGGGAAACTATAGAGGGAATGAGTTAACTCGTTTGGAGACATATAGTGGGTTCCTGATATTAGCTTGCACGTTCTGTATATGAGTAGGCACTTTCTAAACCAAACTGGTCATAATTCTCAGTCAAAACAAATCTGTAAGACACTCTAGGGAAGGAAACGCCTCATTGTAACACAGGCCATACTATTGGCAATTACATACTGGGGAATTTGAAGGGGAAAATATCTGTCTGAAGTTAAGAGATGAAAGTTTCAAATCTGCAATTGCATTAACATAAAAGTATATACcacttagcagacacttttatccaatgtaactTACTCAGTACAGTGAGGGCATACATTTTGAGTATGTGTGTGATCCCTGCAAGAAATTAACCAACAACCTTGCCATTGCCCGCACAACGCTCTTACTAActgagccacagaggaccacactaACAGAAACATCACCCATCACCAGTTTGTTTGGTTTTGACACCTGACACGAACTCATTCTGTGTACACTTTAAAATAATAGATTATGAAGTTCTCCTTGCTTTCCCACTCGTCAGTTGCTTGAGATGactgtgtacagtatatttaatacttgtatgttttacCTCCTggaccaggagtttttcctgaacaAGTGACcacatggtcaggaaaaactcctgcgCTAATCCTAGGGTCCTAGGGAAAAGTAGAATTCATAATAATTGGCACCACTAGCAAAATGATTTCATTTTTGCTAGCCTGAAATCAAAAGCATGTTGTGTATACATTTAGCTTTCTGCCCTTATTCTTTATATCACTGGTTTTAACATAAGATGTCATCAACGTCATGCTTTAGCAAAATGTTCTTCAATAACACTTTTATCAAACACTTGTAAAGTGAAGTAGTTCAAATCCTCTTACAGTCCATAGccacaaaaaaatgtatgttgaTTTTCTTGCCTCGTTTCTTTGTCTTATTTTCTCATGCACATAGATCCATGGTTAGTATTTACATTATTTACAAACAATACAATTGTCCTGTATACCCGGGTCTCTATCTGCTCATACTGTTGTTATAGAAGTAAAATTATATATATTCTTAAATACAGTCTTTTCTCATGAAAAAGATCCGGGGTCTCCATATATACCCATACCTCGTCATTTTATGTACAGAGACGCTATATAGTCAAAAATATGGGCTGGGCTAAACTCTATAAGGGCTAATATAGGGACCCATGTCCTAGACAGGGGCTAGCGTATAGTAAGTATAGGGACTTCTCACAGACTATAAGAAGTCAAGGCAATGCAATGTGACACTCTCCTCAAAACCATATGTGGCTTTTTGAAGTTcatgttaagaacaaattgacAGAGACAGATAACCATCTGAACCGAATATGTCACACATTACCACACAATAGGGGGATAAAACTAACTCGGGCTAAAAAGCCATTTTCTTACTGTAAATTAAATGAAAGAAAATAACAAGGTAAATAAGAAAAATGAaacaaatagataaataaaagCAGAAAACCCAGGTTATTTTCCTTACATAGAGCACATGATAAACACAGGGTAGAGTTAGTCAATGAGGACAGAAGTGAGACACCACTAcacataaatacaaaacaaacaagTTTGGTTCGCATGCAGGAGCTCACAGCTCAAACACATGCATTAGATTCAACAAACACAGACTCACACATCAGGCTAGCAAAATGCTTCCTCAGAGAATGACTTCATAGACAAGTCAATATAACAAATTAAGACACTGTTATTTACACCTAAACCGCTATCTGTTAATGTTCTTCTTACATTCAAGTGTAGTACTTCTCTTTGGGGGACTGGGTGACTGGTTGACCTGTCTAGCCAGCCAATCAGAGTGTGGTGATCACATTGACTTTGCCAACTGCCATAAAAGCCATGGGAGAAGAGCTAGTGAAAAACAGTGCATGCATACAGGATATGGGAGTGATATTTGGTTTATGTTTTCCTTTCCTAAAATGTATCATATATACAGCAAGTACAACAGGTCCAATATAGATTATGCATGTCAATGCAAATGTTGCCCATATGAGAAAACCAATCATCCCATTCTCCGTATCGAACGCGTTCGATAAAAAATGTGCATCTTCAGCTGCATCCTGATCTTTTTCTCTTGTTCTTTTCTGCTCTTGAAGAAAACATTGATCTATCTGTGAAGAGTGCAAAGATGCCAGGAAGGGTAATGTAGTTTCTTCTCTGTGATCTGGAGGAAGAGGAAAGTAAAGCGAGGCTGTGGCCAGAGCCAGGGCCATATGTTCATCAGAGCAGTCTCCCAGAGCAGTGTACCTGTCTGTTTGGGAAGCGTTTGTctcagagaaacagagggaggagagagaggagagttgtctctgtgttgtctcaGTGATATAGTTGCCATGTATCCCTCCTCATTCTCCTGTTTGAGTGTTAGCAGTCTGTTTGTAGAAGAGGAGTGTGGACTGTGAAGTAGTCCCATTGTGAGATTGgtatgaggagagggaggaaaagagaattGCCCCTGTGTGAGACCGAGGGAGgaagggacaggaggagagggaagagaagagtggagaggagctCACAGGATGAGGGGGCTCTGTGTTGGACTGGGTCGTGGGCTCTCAGGACCCCTGGCCTTTCTCTGCTCTCTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU712609 True 4811 lncRNA 0.40 2 56881338 56886168

Neighbor

gene id symbol gene type direction distance location
LOC110528976 LOC106583066 coding upstream 31889 56848506 ~ 56849449 (+)
LOC110528032 LOC106583134 coding upstream 39195 56817281 ~ 56842143 (+)
LOC110528029 mdm4 coding upstream 122115 56750804 ~ 56766586 (+)
ppfia4 LOC106583137 coding upstream 164525 56605892 ~ 56716813 (+)
mdfi LOC106583052 coding upstream 505276 56375199 ~ 56376062 (+)
LOC110528036 LOC106583132 coding downstream 132377 57018545 ~ 57029242 (+)
fbxo2 LOC106583126 coding downstream 160332 57046500 ~ 57052885 (+)
wnt4a1 wnt4a1 coding downstream 325472 57211640 ~ 57240084 (+)
snrpe ruxe coding downstream 433501 57319669 ~ 57323047 (+)
LOC100135783 LOC100135783 coding downstream 450430 57336598 ~ 57405253 (+)
G626670 NA non-coding upstream 1661 56879408 ~ 56879677 (+)
G626664 NA non-coding upstream 7734 56873344 ~ 56873604 (+)
G626663 NA non-coding upstream 8063 56873050 ~ 56873275 (+)
G626661 NA non-coding upstream 9064 56872066 ~ 56872274 (+)
G626685 NA non-coding downstream 10049 56896217 ~ 56896490 (+)
G626681 NA non-coding downstream 11402 56897570 ~ 56898524 (+)
G626736 NA non-coding downstream 146730 57032898 ~ 57034935 (+)
G626737 NA non-coding downstream 149031 57035199 ~ 57039648 (+)
G626770 NA non-coding downstream 156704 57042872 ~ 57043270 (+)
G626417 NA other upstream 396034 56482394 ~ 56485304 (+)
G626004 NA other upstream 802409 56071054 ~ 56078929 (+)
LOC110528024 LOC106583050 other upstream 1166627 55711635 ~ 55714713 (+)
G625222 NA other upstream 1408495 55472468 ~ 55472843 (+)
G625038 NA other upstream 1667427 55211705 ~ 55213911 (+)
G627035 NA other downstream 656714 57542882 ~ 57596051 (+)
LOC110528055 LOC106583107 other downstream 1031866 57917801 ~ 58055214 (+)
LOC110528980 LOC106583093 other downstream 1617382 58502198 ~ 58589001 (+)
G628468 LOC106583084 other downstream 1822127 58708295 ~ 58713584 (+)

Expression


Co-expression Network