G627342


Basic Information

Item Value
gene id G627342
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56896251 ~ 56896997 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU713339
attctaaataaatcactgacagtgtccccagcaaagcaccgccacaccataacacctcctcctccatgcatcatggtgggaactacacatgcagagatcatcatagcctggttcctttctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtaagaagggctatataaaaaaaaatatttgatccgttcacttactctgcatctcacaaagacacagcagttggaaccaaaaatctcacatttggagtcatcagaccaaaggacagatttccactggtctaatgtccattgcttgtgtttcttggcccaagcaagtctctttttcttatttgtgtcctttagtagtgttttctttgcagctattcgaccatgaaggcctgattcacacagtctcttctgaacagttgatgttgagatgcgtctgttacttgaactctgtgaagcatttatttgggctgtaatttctgaggctggtaactccaatgaacttatcctctgcagcagaggtaactctggctcttcctttcctgtggcggtcctcatgagagccagtttcatcatagcgcttgatggtttttgtgactgcacttgaagaaactttcaacgttttttggcattttctggattgactgaccttcaatgTCTTATAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU713339 True 747 lncRNA 0.43 1 56896251 56896997

Neighbor

gene id symbol gene type direction distance location
vamp3 vamp3 coding downstream 26644 56853567 ~ 56869607 (-)
psma5 psma5 coding downstream 90238 56796848 ~ 56806013 (-)
sort1a LOC106583135 coding downstream 99647 56772815 ~ 56796604 (-)
mdm4 mdm4 coding downstream 123825 56757066 ~ 56772426 (-)
myog tmyogenin coding downstream 176064 56716876 ~ 56720187 (-)
phf13 LOC106583125 coding upstream 141427 57036803 ~ 57046463 (-)
LOC110528040 NA coding upstream 159407 57052191 ~ 57059527 (-)
cdc42 cdc42 coding upstream 370445 57267442 ~ 57305408 (-)
LOC110528043 LOC106583121 coding upstream 508750 57405747 ~ 57441999 (-)
LOC110528045 LOC106583117 coding upstream 564923 57461920 ~ 57541619 (-)
G627316 NA non-coding downstream 54122 56840579 ~ 56842129 (-)
G627314 NA non-coding downstream 61159 56834350 ~ 56835092 (-)
G627313 NA non-coding downstream 61959 56833973 ~ 56834292 (-)
G627311 NA non-coding downstream 65147 56830524 ~ 56831104 (-)
G627310 NA non-coding downstream 65818 56830063 ~ 56830433 (-)
G627343 NA non-coding upstream 1095 56898092 ~ 56898535 (-)
G627346 NA non-coding upstream 7403 56904400 ~ 56904778 (-)
G627408 NA non-coding upstream 87347 56984344 ~ 56987712 (-)
G627432 NA non-coding upstream 124892 57021889 ~ 57022773 (-)
G627381 NA non-coding upstream 135853 57032850 ~ 57034989 (-)
G627323 NA other downstream 43950 56846962 ~ 56852301 (-)
G627254 NA other downstream 200160 56691323 ~ 56696091 (-)
LOC110528020 LOC106582955 other downstream 1462179 55420466 ~ 55566988 (-)
G628575 LOC106579815 other upstream 975053 57872050 ~ 57873331 (-)
G628714 NA other upstream 1220193 58117190 ~ 58118122 (-)
LOC110528069 LOC106583062 other upstream 1529178 58425680 ~ 58437154 (-)
LOC110528083 LOC106583085 other upstream 1794820 58691817 ~ 58695856 (-)

Expression

G627342 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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G627342 Expression in each Bioproject

Bar chart with 21 bars.
G627342 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G328601 NA non-coding CI01000112 null 1443081 ~ 1443414 (+)
mexican tetra (Astyanax mexicanus) G272602 NA non-coding NW_019172174.1 APWO02001772.1 95738 ~ 96059 (-)