XLOC_002546


Basic Information

Item Value
gene id XLOC_002546
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5221915 ~ 5223942 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005987
atagtttttaccagcagatgCGCTCTGGgatagtttttaccagcagatggcgctctgggaTAGTTTTTACCAGAAGATGGCGCTCTGGGATAGTTTTTACCAGAAGATGGCGCTCTGGGATAATTTTTACCGGCAGATGGGCTAGTTTTTACAATCAGATGCTGCTCTGGGATATTGTTTACCAGCAGATGGGCTCATTTCTACaagcagatggtgctctgggTTAGTTTATACCAGGAGATGTAACTTTGggatagtttttaaacagcagatgtaaCTCTGGGCTAGTTTATACCAGAAGATtgtgctctgggctagtttataccaggagatggtgctctgggctagtttatACCAGGAGATGGCACTGTGGgatagtttttaccagcagatggtgctctaggctattttataccagcagatggcactctgtgaTCGTTTAAT
>TCONS_00005988
GATTGGgtcaaaaatgaaataataaaccCAATTTTTCACTGTTTATGGGAATACTGACAAATATTTGACGTTTGTCTTATAGAATTGAAATGTTATGGCATCGTTAATACTGGATTTATGAAGATTTCACAAGAAAAAATTGTTTTACATCTGTTTTAATCTTGACCTGAGTAAATCACTGAAGTTGACAGTATGTAACCCACAGCTAAATGGATGAAAATAGCTGAAAATCTAATTAAACTGTCTGTTTAATTGTGAGTCAAAGGTCAAATCCCACAAAAACAAGCCGTTTCTGCAATTCAAAGTGTATAATTGCATAATGATATTATTTTTCAATGTTCAACACaccttaaaggaacagtttactccaaaaatgaaaattcctgCACTGTTTCCTCAATCAAGTGCTTAACTTTAaagagtttctttcatctgttaaaaacaaaatgagaTATTCTGGATCATTTTtgaacactatggaagtcaatggctgcttttcttgatttttcagCACAtatttttgtgctcaacagaataaagaaactcaaagcggtttgaaacaagtagagaATCAgcaaatgatgactgaattttcattttggggtaatAAGGGtgggatttttttaaatagtcgaACATCTCAATGCAAATATCTATTTTCTAATTTTAAATATAGTCAACATCTTTTTCTTGGTGTGAAATACAATCAGTACTTGACAAGTTTCATGAGGTTCAACGTGACGTTTTCGAAAGAATGCAACAGTGTCTGTTAAAAGcaaaacatatgttttaaaacagcttttgAGTGAATCTACAACAGTAGGCAACAGAGAGGAAGGACCCCAGAATTCAGTCTGTGACTATAACATTGAGGCTTTTCAATAAATAAGgtacactgtataaaaaatctgttattttattttttctggcaCCTAGGGTgccgtaataaaaaaaaaaatattggcttttaaattacagacatttacagtaaaataacagactttaaatgacagaaatttaccagaaatttaaatttaaggaaatttctgtaatttaaagtctgttattttacagtaaatgtctgtaatttaacggccgttattttacgttgACGTTTTGTTTTCCGGCACTCTAGCTGCACAGTACACACagattttacagtgtacctgtttaatattttcataatatttcatTTCAGTAACTATCAGATCAGATCAATTAGTTGGGCTATATAAGCAGGTAATATATTTCTGTTGGccttgtttattttagtatggAGCCCTTTAGGGGACGTGGTAATCACATTTTTACAAGTAGATAGTGCTCTGGGATATTTTTTTACCATGAGGTAGCGCTCtgggcaagtttttttttaaacagcagatataACTCTGGGAtattttttaccagcagatggcgctctgggcaagatttttttaaacagcagatgtaaCTCTGGGAtattttttaccagcagatggcaaTCTGggcaatattttttaaacaactgaTGTAACTCCGGgatagtttttaccagcagatgTAGCGCTCTGGgatagtttttaccagcagatggcgctctgggaTAGTTTTTACCAGAAGATGGCGCTCTGGGATAGTTTTTACCAGAAGATGGCGCTCTGGGATAATTTTTACCGGCAGATGGGCTAGTTTTTACAATCAGATGCTGCTCTGGGATATTGTTTACCAGCAGATGGGCTCATTTCTACaagcagatggtgctctgggTTAGTTTATACCAGGAGATGTAACTTTGggatagtttttaaacagcagatgtaaCTCTGGGCTAGTTTATACCAGAAGATtgtgctctgggctagtttataccaggagatggtgctctgggctagtttatACCAGGAGATGGCACTGTGGgatagtttttaccagcagatggtgctctaggctattttataccagcagatggcactctgtgaTCGTTTAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005987 False 444 lncRNA 0.44 2 5221915 5222419
TCONS_00005988 True 1970 lncRNA 0.35 2 5221915 5223942

Neighbor

gene id symbol gene type direction distance location
XLOC_002545 sec31a coding downstream 86127 5092511 ~ 5135788 (-)
XLOC_002544 tmem150c coding downstream 163092 5041977 ~ 5058823 (-)
XLOC_002543 hnrnpd coding downstream 197395 5000623 ~ 5024520 (-)
XLOC_002542 mat2al coding downstream 241765 4969634 ~ 4980150 (-)
XLOC_002541 snx30 coding downstream 259986 4940767 ~ 4961929 (-)
XLOC_002547 CU466285.1 coding upstream 301451 5525393 ~ 5527364 (-)
XLOC_002548 syk coding upstream 309901 5533843 ~ 5581487 (-)
XLOC_002549 st8sia4 coding upstream 443459 5667401 ~ 5684326 (-)
XLOC_002550 NA coding upstream 564678 5788620 ~ 5821584 (-)
XLOC_002551 ankrd55 coding upstream 599817 5823759 ~ 5847904 (-)
XLOC_002540 NA non-coding downstream 299864 4919323 ~ 4922051 (-)
XLOC_002539 NA non-coding downstream 403309 4812304 ~ 4818606 (-)
XLOC_002538 NA non-coding downstream 638895 4573554 ~ 4583020 (-)
XLOC_002537 NA non-coding downstream 644063 4508389 ~ 4577852 (-)
XLOC_002534 NA non-coding downstream 1122732 4095871 ~ 4099183 (-)
XLOC_002554 CABZ01032180.1 non-coding upstream 726521 5950463 ~ 5950578 (-)
XLOC_002555 NA non-coding upstream 812939 6036881 ~ 6037746 (-)
XLOC_002556 NA non-coding upstream 1165327 6389269 ~ 6409797 (-)

Expression


Co-expression Network