G627432


Basic Information

Item Value
gene id G627432
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 57021889 ~ 57022773 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU713434
CTGGTCTTGGTGTCTCGGACCACACTAGTGGTCATAGAGCTGTGGGGTCCCCATCGCCACTGCAGGTAACCCATCGTGTTCTGGTCTAGGTGACGAGCTGTCATTAAAGAACAGCTGGGACGCACGCCACGGGGAGAGAACTGCATACCACACTGAGCCGTCAGGAAActaacaaacagagagagggagatgactaGCATTACAATTGTTGTAGTGTAAAGAGGGCCATATCCTCTCCACTCGATTGGCCACTCACCATCGTGGAGTCAGGTTACGGAACACCTTCATCCCAAACAGAGGTCCCAGTATGTCCCCTGCACCAAACTCCAactacacacatacagagagaaaaTCACAAGCAGACAGAGAGTGAAACACAGACACGTCAGTCAATATCCTTCCTGTGTTCTCTCAGAAACAAGGGagataaaatgtgtgtgtgtctgtggaccTCTCCCCAGCCTTTGGCAGAGGTGACACGGCGGACAGTCATGTTGATGTTGCCTCCTCCGTTGCCgttgtgtgtggagagagagccagacagcATTGCAGTGTCAGAGTTAGTCAACGGAgcTCAATAGACTGGGAGATGTGCATCCTGTTGATCTCGATGTGAGGGAATCCTCCTCCCGGCATCTCCTCAAAGTCCTCATCATAGCGATCAAACAGGTCTGTGGCATCTACTCCCACGCTAATGGTACCctgaacacacagagacatgagaaCACAAAACAGAGTGTT

Function

NR:

description
PREDICTED: dnaJ homolog subfamily C member 11

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU713434 True 741 lncRNA 0.51 2 57021889 57022773

Neighbor

gene id symbol gene type direction distance location
LOC110528035 LOC106583131 coding downstream 4613 56881331 ~ 57017276 (-)
vamp3 vamp3 coding downstream 152282 56853567 ~ 56869607 (-)
psma5 psma5 coding downstream 215876 56796848 ~ 56806013 (-)
sort1a LOC106583135 coding downstream 225285 56772815 ~ 56796604 (-)
mdm4 mdm4 coding downstream 249463 56757066 ~ 56772426 (-)
phf13 LOC106583125 coding upstream 15651 57036803 ~ 57046463 (-)
LOC110528040 NA coding upstream 33631 57052191 ~ 57059527 (-)
cdc42 cdc42 coding upstream 244669 57267442 ~ 57305408 (-)
LOC110528043 LOC106583121 coding upstream 382974 57405747 ~ 57441999 (-)
LOC110528045 LOC106583117 coding upstream 439147 57461920 ~ 57541619 (-)
G627408 NA non-coding downstream 34177 56984344 ~ 56987712 (-)
G627346 NA non-coding downstream 117111 56904400 ~ 56904778 (-)
G627343 NA non-coding downstream 123354 56898092 ~ 56898535 (-)
G627342 NA non-coding downstream 124892 56896251 ~ 56896997 (-)
G627316 NA non-coding downstream 179760 56840579 ~ 56842129 (-)
G627381 NA non-coding upstream 10077 57032850 ~ 57034989 (-)
G627477 NA non-coding upstream 93517 57116290 ~ 57117047 (-)
G627505 NA non-coding upstream 121621 57144394 ~ 57201631 (-)
G627323 NA other downstream 169588 56846962 ~ 56852301 (-)
G627314 NA other downstream 186797 56834350 ~ 56835092 (-)
G627254 NA other downstream 325798 56691323 ~ 56696091 (-)
LOC110528020 LOC106582955 other downstream 1587817 55420466 ~ 55566988 (-)
G628575 LOC106579815 other upstream 849277 57872050 ~ 57873331 (-)
G628714 NA other upstream 1094417 58117190 ~ 58118122 (-)
LOC110528069 LOC106583062 other upstream 1403402 58425680 ~ 58437154 (-)
LOC110528083 LOC106583085 other upstream 1669044 58691817 ~ 58695856 (-)

Expression


Co-expression Network