G626736


Basic Information

Item Value
gene id G626736
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 57032898 ~ 57034935 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU712677
CCAGACACCACATTCTCAGTAAGGGGGTTTCACAAAGCGGGATCAATGAGTTAGAATGCTAACTTTCCTAAATATTttgaaacatttacattttttttttaaagaaagaaatTGTTCTAGTATGACTGACTTATCAGTAACCCATATTCATCTTATTAACTGTAGTTAGTAATAACTAACCAACCCATTGCTCTTGCTTGCTAGAAAGCCCAGCCCAGACAAGCATTCAATAGGTGTATGTctaacagtcagtcagacagtgacATTGATCTAtggcttacagtgccttcagaaagtattcacaccccttgaccttttccacattttgttgtgttacacttTGGATCTAAAATAGATTACATTTAGATATGTTGTCACTGGTACACccccataatgttaaagtggaatagtttaaaaaatgttaccaattcattaaaaatgaaaagctgaaatgtcttgagtcattaagtagacaaccctttgttatggcaagcctaaaaaaGTTAGAGTAAACatttgtttaacaagtcacaacaagttgcatggactcactcaataatagtgtttaacaatttttgaatgacaacctcatctctgtgccccacacatacatataattgtaaggtccctcagagTGAATTTCAAAACACATTTAACCAAAAAAGACCAGAGATATTTTAAAATGCCTTTGCAAAAGGGCACCTATCAGTAGATGGCAAAAAAAGAAAagacagacattgaatatccctttgatcatggggaagttattaatgacactttggatggcatatcaatacacccagtcacgagAAACAGAGGTGTCCTTCCGAACTTAGttgaggaaggaaaccgctcaggaatttGACCGTGAGTCCAATGGTAACTCTAAAACAGTTACGGAATTGAAtagctgtgataagagaaaactgaggatggatcaacaacattgttgatcgttactccacaatactaacctaattgacatagtgaaaagaaaatgaaaatgtggcaaagcaattacatttacatttttgtcctgaatacaaagtgttatgtttggggcaaatccaatacattacAGAGTATCACTCTGCATATGttaaagcatagtggtggctgcatcatgtaatgggtatgcttgtaatcattaaggactgggaagTTTTTCAGCATAGAAAATTAAAACAAAATAGAGAAAAGCATAGGCAaactcctagaggaaaacctggttgtctgctttccaccagacactggtaaattaattcacttttcagcaggacaatagcctaaaaACACAAGGCCCAAGCTACACTAAAGTTCCTTACCAATAGTGAATGTTGAGTGGCCGAGATACAATTTgaacttaaatctacttgaacacctatggcaagacctgaacatGGTTGTCTAGCAGTGCTCAACTACCAATTTGACAgatcttgaagaattttgaaaataatatgggcaaatgttgcacaatccaggtggagaaagctcttagagacttacccagaaatactctcAGCTGGAATCACTGCCAAatatgcttctacaaagtattgactcaggagtatgaatacttatgtaaatgaaatatttcATTTTCAGTAACTTAGCAAagatgtctaaaaacatgttttcactttgtcattatggggtattgttggAGAAgggtaagaaaaaaaaaatagatgttcaattcaggctgtaacaacaaaaacatggaatacgtcaaggggtatgaatacattctgaaggtacTTTATATGAGGTCGACAAGAAACAACAATATGTACACATCAGCAAGCTTAGACTTGACAACTGGTGAAAACATGAATATTTGAAAAAGCTTAAATTCCAAACACAGTCAAAATGCAAACAGCTTGAAGAAAGACACTTCTCCAGAAACTCCAAAATACATTATCAAACCCCATCGAGCCTGGTAGTGATCATTATCAAACCCCAGCGAGCCTGGTAGTGATCATTATCAAACCCCAGCGAGCCTGGTAGTGATCATTATCAAACCCCAGCGAGCCTG
>TU712678
CCAGACACCACATTCTCAGTAAGGGGGTTTCACAAAGCGGGATCAATGAGTTAGAATGCTAACTTTCCTAAATATTttgaaacatttacattttttttttaaagaaagaaatTGTTCTAGTATGACTGACTTATCAGTAACCCATATTCATCTTATTAACTGTAGTTAGTAATAACTAACCAACCCATTGCTCTTGCTTGCTAGAAAGCCCAGCCCAGACAAGCATTCAATAGGTGTATGTctaacagtcagtcagacagtgacATTGATCTAtggcttacagtgccttcagaaagtattcacaccccttgaccttttccacattttgttgtgttacacttTGGATCTAAAATAGATTACATTTAGATATGTTGTCACTGGTACACccccataatgttaaagtggaatagtttaaaaaatgttaccaattcattaaaaatgaaaagctgaaatgtcttgagtcattaagtagacaaccctttgttatggcaagcctaaaaaaGTTAGAGTAAACatttgtttaacaagtcacaacaagttgcatggactcactcaataatagtgtttaacaatttttgaatgacaacctcatctctgtgccccacacatacatataattgtaaggtccctcagagTGAATTTCAAAACACATTTAACCAAAAAAGACCAGAGATATTTTAAAATGCCTTTGCAAAAGGGCACCTATCAGTAGATGGCAAAAAAAGAAAagacagacattgaatatccctttgatcatggggaagttattaatgacactttggatggcatatcaatacacccagtcacgagAAACAGAGGTGTCCTTCCGAACTTAGttgaggaaggaaaccgctcaggaatttGACCGTGAGTCCAATGGTAACTCTAAAACAGTTACGGAATTGAAtagctgtgataagagaaaactgaggatggatcaacaacattgttgatcgttactccacaatactaacctaattgacatagtgaaaagaaaatgaaaatgtggcaaagcaattacatttacatttttgtcctgaatacaaagtgttatgtttggggcaaatccaatacattacAGAGTATCACTCTGCATATGttaaagcatagtggtggctgcatcatgtaatgggtatgcttgtaatcattaaggactgggaagTTTTTCAGCATAGAAAATTAAAACAAAATAGAGAAAAGCATAGGCAaactcctagaggaaaacctggttgtctgctttccaccagacactggtaaattaattcacttttcagcaggacaatagcctaaaaACACAAGGCCCAAGCTACACTAAAGTTCCTTACCAATAGTGAATGTTGAGTGGCCGAGATACAATTTgaacttaaatctacttgaacacctatggcaagacctgaacatGGTTGTCTAGCAGTGCTCAACTACCAATTTGACAgatcttgaagaattttgaaaataatatgggcaaatgttgcacaatccaggtggagaaagctcttagagacttacccagaaatactctcAGCTGGAATCACTGCCAAatatgcttctacaaagtattgactcaggagtatgaatactt

Function

NR:

description
putative transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU712677 False 2038 lncRNA 0.37 1 57032898 57034935
TU712678 True 1582 lncRNA 0.37 1 57032898 57034479

Neighbor

gene id symbol gene type direction distance location
LOC110528036 LOC106583132 coding upstream 3656 57018545 ~ 57029242 (+)
LOC110528976 LOC106583066 coding upstream 183449 56848506 ~ 56849449 (+)
LOC110528032 LOC106583134 coding upstream 190755 56817281 ~ 56842143 (+)
LOC110528029 mdm4 coding upstream 273675 56750804 ~ 56766586 (+)
ppfia4 LOC106583137 coding upstream 316085 56605892 ~ 56716813 (+)
fbxo2 LOC106583126 coding downstream 11565 57046500 ~ 57052885 (+)
wnt4a1 wnt4a1 coding downstream 176705 57211640 ~ 57240084 (+)
snrpe ruxe coding downstream 284734 57319669 ~ 57323047 (+)
LOC100135783 LOC100135783 coding downstream 301663 57336598 ~ 57405253 (+)
si:ch211-112f3.4 LOC106583119 coding downstream 420902 57455837 ~ 57461702 (+)
G626681 NA non-coding upstream 134374 56897570 ~ 56898524 (+)
G626685 NA non-coding upstream 136408 56896217 ~ 56896490 (+)
G626671 NA non-coding upstream 146730 56881338 ~ 56886168 (+)
G626670 NA non-coding upstream 153221 56879408 ~ 56879677 (+)
G626664 NA non-coding upstream 159294 56873344 ~ 56873604 (+)
G626737 NA non-coding downstream 264 57035199 ~ 57039648 (+)
G626770 NA non-coding downstream 7937 57042872 ~ 57043270 (+)
G626683 NA non-coding downstream 79743 57114678 ~ 57115898 (+)
G626865 NA non-coding downstream 235435 57270370 ~ 57272552 (+)
G626864 LOC106565619 non-coding downstream 241569 57276504 ~ 57305333 (+)
G626417 NA other upstream 547594 56482394 ~ 56485304 (+)
G626004 NA other upstream 953969 56071054 ~ 56078929 (+)
LOC110528024 LOC106583050 other upstream 1318187 55711635 ~ 55714713 (+)
G625222 NA other upstream 1560055 55472468 ~ 55472843 (+)
G625038 NA other upstream 1818987 55211705 ~ 55213911 (+)
G627035 NA other downstream 507947 57542882 ~ 57596051 (+)
LOC110528055 LOC106583107 other downstream 883099 57917801 ~ 58055214 (+)
LOC110528980 LOC106583093 other downstream 1468615 58502198 ~ 58589001 (+)
G628468 LOC106583084 other downstream 1673360 58708295 ~ 58713584 (+)

Expression


Co-expression Network