G628575 (LOC106579815)


Basic Information

Item Value
gene id G628575
gene name LOC106579815
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 57872050 ~ 57873331 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU714707
CATAGTGTATCAGTTGGGTGACACCTGTTTACTTCATGAATGGCTGATGTCATACACTAACTGCACAAATTTCCTGTAGAATTTACTCTACTGTGGGGGAAATATCTTTAGGCTGCATTGTCCAAGctctatttttttgtttttctaaaGGACTGAGAGAAGCAACCATGGTGGAGGAAGGGGCCAAATGTTCACCGGGGTACAGGAAGCTGCCATTGTAAACTTGGTTTTGGAAAATAATGAAATCAGATTACGAGAAATTCAAAGCCACATCATCCAAGACAACACCATATTCAACAACATTCAACGAGTCAGTCTGTCCACATTGGCTCGCATTCTCAAGCGAAACCAAATCAGAATGAAACAACTTTATAAGGTGCCGTTTGAGAGAAACTCTCAAAGAAACAAAGAGGTCAGACGAGCATATGTGGATGGAGTACTGGAAATGGATGCTCATGCAATCCCACATGAGTTCATCTTTATAGACGAGGCTGGGTTCAACCTAGCAGAGACCAGAAGAAGGGGGTGAAACGTCATTGGCCACAGAGCCATTATAGATGTTCCTGGCCAACGTGGTGGGAACATCACAATGTGTGCTGCCATCTCCAATACGCATGGTCTCCTCCACCATCATGCCAACCTTGGACCATACAACACAGCCCATATTCTCACATTTCTGGACAGACTCCACAACATTCTCATACCACCAGAGCGTATGAATGATGCAGATCATCAAAGAACCAGGTACGTTGCAGTATGGGACAACGTGAGCTTTCATTGTGCAGCTCCAGTCCAAAACTGGTTTGCTGACCACCCACCATTTCTCGTGCAATACCTCCCACCATACTCACCATTTCTGAACCCCATAGAAGAGTTATTTtcggcatggcggtggaaggtgtaCGACCGGCAGCCCTTTGTGCGCAGACCTCTTGTGCAGACTATAGAAGAGGCATGTGATGAGATTGATG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106579815

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU714707 True 971 TUCP 0.45 2 57872050 57873331

Neighbor

gene id symbol gene type direction distance location
LOC110528053 nucks1 coding downstream 66782 57794775 ~ 57805268 (-)
LOC110528052 LOC106583108 coding downstream 82891 57782135 ~ 57789159 (-)
LOC110528051 LOC106583109 coding downstream 113519 57752075 ~ 57758531 (-)
LOC110528050 LOC106583110 coding downstream 142733 57712894 ~ 57729317 (-)
LOC110528047 NA coding downstream 269949 57579045 ~ 57602101 (-)
LOC110528056 LOC106583106 coding upstream 248225 58121556 ~ 58138678 (-)
LOC110528058 LOC106583105 coding upstream 306527 58179858 ~ 58192254 (-)
LOC110528061 mfap2 coding upstream 360125 58233456 ~ 58239552 (-)
LOC110528062 LOC106583101 coding upstream 369366 58242697 ~ 58253037 (-)
LOC110528063 LOC106583099 coding upstream 393404 58266735 ~ 58276595 (-)
G628018 NA non-coding downstream 5890 57865922 ~ 57866160 (-)
G628013 NA non-coding downstream 8446 57863359 ~ 57863604 (-)
G628011 NA non-coding downstream 9882 57861928 ~ 57862168 (-)
G627835 NA non-coding downstream 161205 57710487 ~ 57710845 (-)
G628592 NA non-coding upstream 26471 57899802 ~ 57954090 (-)
G628649 NA non-coding upstream 124520 57997851 ~ 58005983 (-)
G628654 NA non-coding upstream 126657 57999988 ~ 58008064 (-)
G628596 NA non-coding upstream 140352 58013683 ~ 58016772 (-)
G628681 NA non-coding upstream 178653 58051984 ~ 58055214 (-)
LOC110528040 NA other downstream 813480 57052191 ~ 57059527 (-)
vamp3 vamp3 other downstream 1002599 56853567 ~ 56869607 (-)
G627323 NA other downstream 1019749 56846962 ~ 56852301 (-)
G627314 NA other downstream 1036958 56834350 ~ 56835092 (-)
G627254 NA other downstream 1175959 56691323 ~ 56696091 (-)
G628714 NA other upstream 243859 58117190 ~ 58118122 (-)
LOC110528069 LOC106583062 other upstream 552844 58425680 ~ 58437154 (-)
LOC110528083 LOC106583085 other upstream 818486 58691817 ~ 58695856 (-)
sfrs3 sfrs3 other upstream 834241 58707572 ~ 58713630 (-)
G630132 NA other upstream 1874119 59747450 ~ 59752591 (-)

Expression


Co-expression Network