G628596


Basic Information

Item Value
gene id G628596
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58013683 ~ 58016772 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU714733
tataagagacaAGgttttctgggttgcttgattgtttttaatgattTACTGGGAAGGTTATCAGAggtagacttactcatgttatttacattcGAGCTGATAGTACAGGGGGAGCTGCATAAAGTGGTCTTCCTTCTattgcacaccgcctcagtgctaacagtgtaactctagtttataggctcatgattacttCTTACAATAGCTGTAAGATAAACAGATGTATTCGGTTCAATTAGGGGtacattgtgtttgccaatgccTCTAAGATgatgtacatttgatgcagcattatgacaactcattgtcacaatggtagggattaactgagctggtatttgatcatttaccagtcattgtttcaacgcagccttgaaatgcgtGGAGTCCAGGAGTCAAGATGATTTGAATGGACtccgtcattcctgtagagtatcttttgtttccagaaggtgtcaaagttataaaagtgactccagcagagctacagtagtctactagccagatgtgtaatgccagcattctgctgaatctttcacaccaGCGACCCAACGATGGTACTGGACGGCTTCATTAAGCCTTCATAGAGACTACATAAATGTGTTACAAATCATCTATAACAGTATGtaatgctttataaagggttcataaatgtggcataactgtgtgacataaccACCAATGTCAAATATGACAACCCACTATGTCAATATGACTTTATAAATCATATTAAAATGAGGCTTCACAAAACATTTAACCCTGTCATGCATCTTGGTAGAGCAATGCAATTCCATTATATTGGGTTCGATTCATGGGACCACCCATATGGAAAAATGTATtcatgcatgactgtaagttgctttggataaaagtctcTGCTAAattgtgtatattatattatatatcaaTAAAACATTTCTAGGATGGCCCAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU714733 True 934 lncRNA 0.38 2 58013683 58016772

Neighbor

gene id symbol gene type direction distance location
LOC110528053 nucks1 coding downstream 208415 57794775 ~ 57805268 (-)
LOC110528052 LOC106583108 coding downstream 224524 57782135 ~ 57789159 (-)
LOC110528051 LOC106583109 coding downstream 255152 57752075 ~ 57758531 (-)
LOC110528050 LOC106583110 coding downstream 284366 57712894 ~ 57729317 (-)
LOC110528047 NA coding downstream 411582 57579045 ~ 57602101 (-)
LOC110528056 LOC106583106 coding upstream 104784 58121556 ~ 58138678 (-)
LOC110528058 LOC106583105 coding upstream 163086 58179858 ~ 58192254 (-)
LOC110528061 mfap2 coding upstream 216684 58233456 ~ 58239552 (-)
LOC110528062 LOC106583101 coding upstream 225925 58242697 ~ 58253037 (-)
LOC110528063 LOC106583099 coding upstream 249963 58266735 ~ 58276595 (-)
G628654 NA non-coding downstream 5619 57999988 ~ 58008064 (-)
G628649 NA non-coding downstream 7700 57997851 ~ 58005983 (-)
G628592 NA non-coding downstream 59593 57899802 ~ 57954090 (-)
G628018 NA non-coding downstream 147523 57865922 ~ 57866160 (-)
G628013 NA non-coding downstream 150079 57863359 ~ 57863604 (-)
G628681 NA non-coding upstream 35212 58051984 ~ 58055214 (-)
G628697 NA non-coding upstream 76275 58093047 ~ 58093260 (-)
G628700 NA non-coding upstream 79430 58096202 ~ 58096437 (-)
G628705 NA non-coding upstream 89968 58106740 ~ 58106998 (-)
G628708 NA non-coding upstream 92752 58109524 ~ 58109740 (-)
G628575 LOC106579815 other downstream 140352 57872050 ~ 57873331 (-)
LOC110528040 NA other downstream 955113 57052191 ~ 57059527 (-)
vamp3 vamp3 other downstream 1144232 56853567 ~ 56869607 (-)
G627323 NA other downstream 1161382 56846962 ~ 56852301 (-)
G627314 NA other downstream 1178591 56834350 ~ 56835092 (-)
G628714 NA other upstream 100418 58117190 ~ 58118122 (-)
LOC110528069 LOC106583062 other upstream 409403 58425680 ~ 58437154 (-)
LOC110528083 LOC106583085 other upstream 675045 58691817 ~ 58695856 (-)
sfrs3 sfrs3 other upstream 690800 58707572 ~ 58713630 (-)
G630132 NA other upstream 1730678 59747450 ~ 59752591 (-)

Expression


Co-expression Network