G628739


Basic Information

Item Value
gene id G628739
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58177709 ~ 58178222 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU714889
cacctggactgtgcaacatttgcccattactATTTTAAAcattcttcaagttctgtcaaattggttgctgatcattgctagacaggcaTTGTcaagtattgccatagattttcaaatagatttaagtcaaaacttcaacttggccactcaggaacattcactgccttcttggtaagcaactccagtgtagatttggccttgtgtttaaggttattgtgctgctgaaaggtgaattcatctaccagtgtctgatggaaagcaaactgaaccaggtttttctctagaattttgcctgtgcacttcttttttatcctgaaaagctCCCCaatccttaatgattacaagcatacccataacatgatacagccaccgcTATGCTTTAAAATacggagagtggtactcagtaatgtgttatgttggatttgcccaaacataaagctttgtattcaggaaataaagttaattgctttgccaacaAATatctgtttaatccattttaaattcaggctgtaac

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU714889 True 514 lncRNA 0.38 1 58177709 58178222

Neighbor

gene id symbol gene type direction distance location
LOC110528056 LOC106583106 coding downstream 39031 58121556 ~ 58138678 (-)
LOC110528053 nucks1 coding downstream 372441 57794775 ~ 57805268 (-)
LOC110528052 LOC106583108 coding downstream 388550 57782135 ~ 57789159 (-)
LOC110528051 LOC106583109 coding downstream 419178 57752075 ~ 57758531 (-)
LOC110528050 LOC106583110 coding downstream 448392 57712894 ~ 57729317 (-)
LOC110528058 LOC106583105 coding upstream 1636 58179858 ~ 58192254 (-)
LOC110528061 mfap2 coding upstream 55234 58233456 ~ 58239552 (-)
LOC110528062 LOC106583101 coding upstream 64475 58242697 ~ 58253037 (-)
LOC110528063 LOC106583099 coding upstream 88513 58266735 ~ 58276595 (-)
LOC110528064 ssu72 coding upstream 99630 58277852 ~ 58282613 (-)
G628726 NA non-coding downstream 36558 58140506 ~ 58141151 (-)
G628712 NA non-coding downstream 65033 58112421 ~ 58112676 (-)
G628708 NA non-coding downstream 67969 58109524 ~ 58109740 (-)
G628705 NA non-coding downstream 70711 58106740 ~ 58106998 (-)
G628700 NA non-coding downstream 81272 58096202 ~ 58096437 (-)
G628746 NA non-coding upstream 22882 58201104 ~ 58201409 (-)
G628750 NA non-coding upstream 27421 58205643 ~ 58205909 (-)
G628765 NA non-coding upstream 47635 58225857 ~ 58268848 (-)
G628768 NA non-coding upstream 66565 58244787 ~ 58269773 (-)
G628787 NA non-coding upstream 93142 58271364 ~ 58271743 (-)
G628714 NA other downstream 59587 58117190 ~ 58118122 (-)
G628575 LOC106579815 other downstream 304378 57872050 ~ 57873331 (-)
LOC110528040 NA other downstream 1119139 57052191 ~ 57059527 (-)
vamp3 vamp3 other downstream 1308258 56853567 ~ 56869607 (-)
G627323 NA other downstream 1325408 56846962 ~ 56852301 (-)
LOC110528069 LOC106583062 other upstream 247953 58425680 ~ 58437154 (-)
LOC110528083 LOC106583085 other upstream 513595 58691817 ~ 58695856 (-)
sfrs3 sfrs3 other upstream 529350 58707572 ~ 58713630 (-)
G630132 NA other upstream 1569228 59747450 ~ 59752591 (-)
G630227 NA other upstream 1737757 59915979 ~ 59917551 (-)

Expression


Co-expression Network