G628217


Basic Information

Item Value
gene id G628217
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58204488 ~ 58204952 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU714284
ctggcggggcccctgtgttgaggatcagtaaagtggaggtgttgtttcctaccttcaccacctgggggcggcctgtcaggaagtccaggacccagttgcacaaggtggggttcagacccagggccctgagcttaatgatgagcttggagggtactatggtgttgaatgctgagctatagtcaatgaacagcattctgacatcGGTATTCCTCTTGcacagatgggatagggcagtgtgcagtgcgattgcATCgtttgtggatctattggggcggtaagaaaatttaagtgggtttagggtgtcaggtaaggtagaggtgatatgatcagAGGCTACctagaacatatcccagtccgggTGATCTAAACAATCTTGAAGCCTGGactctgattggtcagaccagcattgaatagaccttagcacgagtacttcctgtttgagtttctgcataTAGGAATGGAGGc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU714284 True 465 lncRNA 0.50 1 58204488 58204952

Neighbor

gene id symbol gene type direction distance location
LOC110528059 LOC106583104 coding upstream 4232 58195725 ~ 58200256 (+)
LOC118965357 NA coding upstream 105948 58075751 ~ 58098540 (+)
LOC110528055 LOC106583107 coding upstream 149274 57917801 ~ 58055214 (+)
cdk18 LOC106583111 coding upstream 501557 57652040 ~ 57702931 (+)
LOC118965384 NA coding upstream 589854 57612793 ~ 57614634 (+)
LOC110528060 LOC106583103 coding downstream 1992 58206944 ~ 58233454 (+)
LOC110528978 atad3 coding downstream 49675 58254627 ~ 58265496 (+)
LOC110527127 NA coding downstream 84473 58289425 ~ 58291045 (+)
LOC110528068 LOC106595335 coding downstream 201833 58406785 ~ 58411255 (+)
LOC110528073 LOC106583096 coding downstream 265160 58470112 ~ 58500215 (+)
G628216 NA non-coding upstream 1683 58202383 ~ 58202805 (+)
G628215 NA non-coding upstream 10092 58194145 ~ 58194396 (+)
G628214 NA non-coding upstream 10500 58193123 ~ 58193988 (+)
G628186 NA non-coding upstream 52195 58151994 ~ 58152293 (+)
G628185 NA non-coding upstream 52925 58151336 ~ 58151563 (+)
G628218 NA non-coding downstream 49 58205001 ~ 58205221 (+)
G628224 NA non-coding downstream 35460 58240412 ~ 58242251 (+)
G628240 NA non-coding downstream 65853 58270805 ~ 58271045 (+)
G628255 NA non-coding downstream 92836 58297788 ~ 58364064 (+)
G627035 NA other upstream 608437 57542882 ~ 57596051 (+)
snrpe ruxe other upstream 881467 57319669 ~ 57323047 (+)
G626417 NA other upstream 1719184 56482394 ~ 56485304 (+)
G626004 NA other upstream 2125559 56071054 ~ 56078929 (+)
LOC110528980 LOC106583093 other downstream 298598 58502198 ~ 58589001 (+)
G628468 LOC106583084 other downstream 503343 58708295 ~ 58713584 (+)
LOC110528095 LOC106565671 other downstream 813393 58969726 ~ 59022859 (+)
LOC110528099 LOC106583069 other downstream 863718 59068637 ~ 59084729 (+)
G629678 NA other downstream 1479379 59684331 ~ 59684763 (+)

Expression


Co-expression Network