G628224


Basic Information

Item Value
gene id G628224
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58240412 ~ 58242251 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU714291
GCATTAAAGCATTACATTTATTACACATTAAAACAAAGACTcccgttatatatatatatatatacacacacactcacagttgaagtcagaagtttatatacacttaggttggagtcaattaaacttgtttttcaaccactccacaaatttcttgttaacaaactatagttttggcaagtcggttaggacatttacgttgtgcatgacacaagtaatttttccaacaattgtttacagacagattatttcacttaaatcacaattccagtgggtcagaagtttacatacactaagttgactgtgcctttaaacagcttggaaaattccagaaaatggtgtcatggctttagaagcttcggaatggctaattgacataatttgagtcaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaaaccagccaagacctccacaagtctggttcatcctttggagcaattgcCAAACGCCTGAAgtcaccacgttcatctgtacaaacaatagtacgcaagtataaacaccatgggaccacgcagccgtcataccgctcaggaaggagacgcattctctctcctagagatgaacatactttagtttgaaaagtgcaaatcaaccccagaacaacagcaaatgaccttgtgaagatgctggaggaaacaggtacaaaagtatctatatccacagtaaaacgagtcctatatcgacataacctcaaAGGCCGcacagtaaggaagaagccactgttccaaagccgcataaaaaagacagattacggtttgcaactgcacatggggacaaagatggtactttttggacaaatgccctctggtctgatgaaacaaaaattgtactgtttggccataatggccatagttatgtttggaggaaaaatgggggggcttgcaagctggagaacaccatcccaaccgtgaagtacgggggtggcagcatcatgttgtgagtgctttgctgcaggagggactggtgcacttcacaaaatagatggcatcatgaggtaggaaagttatgtggatatactgaagcaatatctcaagacatcagtcgataagttaaagcttggtcccaaatggacaatgacccaaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtggagtggccatcacaaagccctgacctcaatcctatagacaatttgtgggcagaactgaaaaagtgtgtgcgagcaaggaggccttacaaacctgactccgttacaccagctctgtcaggaggaatgggtcaaaattcacccaacgtattgtgggaagcttgatgAAGGCTActtaaaacgtttgacccaaatgaaacaatttaaaggcaatgctaccaaatactaattgagtgtatttaaacttctgacccactgggaatgtgatgaaagaaataaaagcttaaataaatcactaccattattctaacatttcacattcttaaaataaagtggtgatcctaactgaaccaaagacagggaatttttactaggattaaatgtcaggaattgtgaaaaaacagagtttaaatgtatttgactaaggtgtattaacttccgacttcaactgtatatagttatGATGGATGAGCAACAGATATACATATTTATTGTCTGTGAATCCATCACCCTCTGAACTCAAACCCACCCACCATCATTCTAGTGAAGTTAGCAGGTCATGTCTCACATCTCTCCCAACTGTTCCCTAGGATtccaattttttaatttttt

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU714291 True 1815 lncRNA 0.40 2 58240412 58242251

Neighbor

gene id symbol gene type direction distance location
LOC110528060 LOC106583103 coding upstream 6958 58206944 ~ 58233454 (+)
LOC110528059 LOC106583104 coding upstream 40156 58195725 ~ 58200256 (+)
LOC118965357 NA coding upstream 141872 58075751 ~ 58098540 (+)
LOC110528055 LOC106583107 coding upstream 185198 57917801 ~ 58055214 (+)
cdk18 LOC106583111 coding upstream 537481 57652040 ~ 57702931 (+)
LOC110528978 atad3 coding downstream 12376 58254627 ~ 58265496 (+)
LOC110527127 NA coding downstream 47174 58289425 ~ 58291045 (+)
LOC110528068 LOC106595335 coding downstream 164534 58406785 ~ 58411255 (+)
LOC110528073 LOC106583096 coding downstream 227861 58470112 ~ 58500215 (+)
LOC110528980 LOC106583093 coding downstream 259947 58502198 ~ 58589001 (+)
G628218 NA non-coding upstream 35191 58205001 ~ 58205221 (+)
G628217 NA non-coding upstream 35460 58204488 ~ 58204952 (+)
G628216 NA non-coding upstream 37607 58202383 ~ 58202805 (+)
G628215 NA non-coding upstream 46016 58194145 ~ 58194396 (+)
G628214 NA non-coding upstream 46424 58193123 ~ 58193988 (+)
G628240 NA non-coding downstream 28554 58270805 ~ 58271045 (+)
G628255 NA non-coding downstream 55537 58297788 ~ 58364064 (+)
G628344 NA non-coding downstream 201673 58443924 ~ 58448516 (+)
G628351 LOC106583097 non-coding downstream 210729 58452980 ~ 58456770 (+)
G627035 NA other upstream 644361 57542882 ~ 57596051 (+)
snrpe ruxe other upstream 917391 57319669 ~ 57323047 (+)
G626417 NA other upstream 1755108 56482394 ~ 56485304 (+)
G626004 NA other upstream 2161483 56071054 ~ 56078929 (+)
G628468 LOC106583084 other downstream 466044 58708295 ~ 58713584 (+)
LOC110528095 LOC106565671 other downstream 776094 58969726 ~ 59022859 (+)
LOC110528099 LOC106583069 other downstream 826419 59068637 ~ 59084729 (+)
G629678 NA other downstream 1442080 59684331 ~ 59684763 (+)

Expression


Co-expression Network