G628787


Basic Information

Item Value
gene id G628787
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58271364 ~ 58271743 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU714947
GCATGACATTTCCACCTTTTAGATTTTGTAgcatagagaaagttaagatatcagacaggggaggagatattaataatactctgagtaaaagataatgttttgggattttcacccttcagacattatttcctaaaggaCTTCATGATGAAATGCCTATGCATGTTATGTTGTGAATTAGAACATGACATATGTGTCTTTTGTAGATTATTCTGACGTTTTTCATACGATGTACCCAGTGACTAATGAAAACTTACTATGTCCCCATTGAGATTTTACAGACGTGTTCAATACGCCTTATTTATACACTTTtgtaatatttatgaaatgcatattgttatatttggtagcacttatttgtttttcctttgcCTCCAACCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU714947 True 380 lncRNA 0.33 1 58271364 58271743

Neighbor

gene id symbol gene type direction distance location
LOC110528062 LOC106583101 coding downstream 18327 58242697 ~ 58253037 (-)
LOC110528061 mfap2 coding downstream 31812 58233456 ~ 58239552 (-)
LOC110528058 LOC106583105 coding downstream 79110 58179858 ~ 58192254 (-)
LOC110528056 LOC106583106 coding downstream 132686 58121556 ~ 58138678 (-)
LOC110528053 nucks1 coding downstream 466096 57794775 ~ 57805268 (-)
LOC110528064 ssu72 coding upstream 6109 58277852 ~ 58282613 (-)
LOC110528066 LOC106583064 coding upstream 12001 58283744 ~ 58286379 (-)
LOC110528979 LOC106583057 coding upstream 19543 58291286 ~ 58292996 (-)
LOC110527128 LOC106583056 coding upstream 38587 58310330 ~ 58313518 (-)
LOC110528067 LOC106583063 coding upstream 51125 58322868 ~ 58345203 (-)
G628768 NA non-coding downstream 1591 58244787 ~ 58269773 (-)
G628765 NA non-coding downstream 2516 58225857 ~ 58268848 (-)
G628750 NA non-coding downstream 65455 58205643 ~ 58205909 (-)
G628746 NA non-coding downstream 69955 58201104 ~ 58201409 (-)
G628739 NA non-coding downstream 93142 58177709 ~ 58178222 (-)
G628790 NA non-coding upstream 2317 58274060 ~ 58274287 (-)
G628791 NA non-coding upstream 3044 58274787 ~ 58275029 (-)
LOC110528069 LOC106583062 non-coding upstream 157740 58425680 ~ 58437154 (-)
LOC110528071 LOC106583097 non-coding upstream 181234 58452974 ~ 58456858 (-)
G628878 NA non-coding upstream 198442 58470185 ~ 58496244 (-)
G628714 NA other downstream 153242 58117190 ~ 58118122 (-)
G628575 LOC106579815 other downstream 398033 57872050 ~ 57873331 (-)
LOC110528040 NA other downstream 1212794 57052191 ~ 57059527 (-)
vamp3 vamp3 other downstream 1401913 56853567 ~ 56869607 (-)
G627323 NA other downstream 1419063 56846962 ~ 56852301 (-)
LOC110528083 LOC106583085 other upstream 420074 58691817 ~ 58695856 (-)
sfrs3 sfrs3 other upstream 435829 58707572 ~ 58713630 (-)
G630132 NA other upstream 1475707 59747450 ~ 59752591 (-)
G630227 NA other upstream 1644236 59915979 ~ 59917551 (-)

Expression


Co-expression Network