G628988


Basic Information

Item Value
gene id G628988
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58587072 ~ 58588990 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU715171
TCTGTTTTACTCATTGCATTTTGGAAAATTCCTTTAGAAAGCCATTTATCTTAGAAAAATACAAGTCATATCTACCCTGGATCACTAAAGCTTTGACATCAGTAACCTACTACAGGTCTTGGTTTTAAGCAGTTGATGGCTTGGAGCTCCAATTATGAACTGTTCGTACCAACCAGATAAGGAGCTCTTCACAGTTGAGTCTCAACAAAGTGATTCATTAGGATCCCGATAATGTGGTAATGAAAATgagagattgaactcttttgtaGGCCTGATATTCAATAACCCTTCAGCAAGTGTTACCTTGTATTTACCATAGTGTTGTTGTAGGAAAACATTTTCAAGAAACAATTGGCAATGCAGAAATTCCCTCGACTTGGCACATATTGTTGAGGTATTGTATCATGGAGAATGCTCTCAGATGTCCGTTCATTTCATTTTAGGGAGCACCAGTGCAAACACAATCCTCTCAGGAACTGTAGTGTTATTAAATCTTCCGATGAAGGCTGTGTCGGTGCTTGTGGAGTAATGTTAAATTAATGATAAGACCTTTTAAGACACATAAAAACAAGTAACATGCAAGAGAAATAACAGGTTCTTTCCTACACATCAATACATTGCCTGAACTGCTTTTCAATAGTTGGAATGTAGTGGTGTACGGTATATTTGAGCACTGACTGAGGTGTGTACAGTTTATGCAGTATTAGTGTATGTCATTTTACAGACAACTCTGTACAGTAAAATTGGAATACATTTGAAACAGTATTACAGTAAGTATTTGACAAAACAATGGGTCCTTCATATCTGATCTATAAAATACAAAGTTATTTAGTCACGGATTCAAATGAAGGCAAATATCCCTTGGACAAAAACGGGAGCATCTTCAATGTTCATACAAAAATGTGCTCCCAACACTTTACAAAAGTCAAGATGTATCAAAAGTCCTTGTTATACAAATTCTTGACACGCACACTCTTTTCCTCCAATGATGATGTAATAAAACAAAAGGCGAAGTGGTGGAGAAAGGCAGGCGTTCTCCCTCTGGATGACAGCTGTCCGGTCACTGTTGCCTTACAGAGCGCGTCCAATACGGGGCATTGCAATACTAAGTGACCCAATGGCCTCACTGTCCACAACCCAGTTCTCCAGCCACACTTCCAACAGGAGTCCCTTTCCTCCAGTGCCTGAACTCAGCTGGGTGGAGCTGTCCCCATCTCCTGTTCAGTCTGGGGACATGTTGGACTGACTGCTCAGGCTGGCAGCTTCCAGAGACTGGAGTGGAGAAGAGTGAGTCCTCTCTACACTGCAGCAAAACTCAAACTGGCCTCAGCCCTCAGTAGAACAATTAAATcatcaaacaaaacaacaactgtaCAGGCGACCCTTTCTGAAATTACAAATTAGATAAGGAATTTCCCTGAACGTTTAAAATCTGACAGCTAAATGACACAACCAAAGGAGGACTTCATTTTTCCGTATCTCCGGAGTTTGAAACATAAAACGAAACATCTGCTCCAGTTGACTACCAGCACATCTGGTCAGGCAGTGTAAATTATTTTTAAAAGTACATCGCTTCAAGTATGTAAACAaacaatgatatatatattttttttaaagagggaGACTCATTCCATCAGTGCTGTCAAGCCTGGGCCAGTGCAGAGACTCCTGAGGTTTGGCTCTGTCTCCtgctctctcgcacacacacgcaccctcTTAAAAAATGAGGGGGAAGAGCGAGGGTACTCCATGTATCTCCAGTTGAGGACAATCCAACGCTCTGTGTCTCCTCACACATCAGCTCCTGTCACTCAGAGAAAAGTGTGTGTGGCGATGAGGGGCTGGGCTCTATGACCTGCAAAGACACACCCCTCCGTCAGCCTGCTCATATGTGT
>TU715172
TCTGTTTTACTCATTGCATTTTGGAAAATTCCTTTAGAAAGCCATTTATCTTAGAAAAATACAAGTCATATCTACCCTGGATCACTAAAGCTTTGACATCAGTAACCTACTACAGGTCTTGGTTTTAAGCAGTTGATGGCTTGGAGCTCTTCACAGTTGAGTCTCAACAAAGTGATTCATTAGGATCCCGATAATGTGGTAATGAAAATgagagattgaactcttttgtaGGCCTGATATTCAATAACCCTTCAGCAAGTGTTACCTTGTATTTACCATAGTGTTGTTGTAGGAAAACATTTTCAAGAAACAATTGGCAATGCAGAAATTCCCTCGACTTGGCACATATTGTTGAGGTATTGTATCATGGAGAATGCTCTCAGATGTCCGTTCATTTCATTTTAGGGAGCACCAGTGCAAACACAATCCTCTCAGGAACTGTAGTGTTATTAAATCTTCCGATGAAGGCTGTGTCGGTGCTTGTGGAGTAATGTTAAATTAATGATAAGACCTTTTAAGACACATAAAAACAAGTAACATGCAAGAGAAATAACAGGTTCTTTCCTACACATCAATACATTGCCTGAACTGCTTTTCAATAGTTGGAATGTAGTGGTGTACGGTATATTTGAGCACTGACTGAGGTGTGTACAGTTTATGCAGTATTAGTGTATGTCATTTTACAGACAACTCTGTACAGTAAAATTGGAATACATTTGAAACAGTATTACAGTAAGTATTTGACAAAACAATGGGTCCTTCATATCTGATCTATAAAATACAAAGTTATTTAGTCACGGATTCAAATGAAGGCAAATATCCCTTGGACAAAAACGGGAGCATCTTCAATGTTCATACAAAAATGTGCTCCCAACACTTTACAAAAGTCAAGATGTATCAAAAGTCCTTGTTATACAAATTCTTGACACGCACACTCTTTTCCTCCAATGATGATGTAATAAAACAAAAGGCGAAGTGGTGGAGAAAGGCAGGCGTTCTCCCTCTGGATGACAGCTGTCCGGTCACTGTTGCCTTACAGAGCGCGTCCAATACGGGGCATTGCAATACTAAGTGACCCAATGGCCTCACTGTCCACAACCCAGTTCTCCAGCCACACTTCCAACAGGAGTCCCTTTCCTCCAGTGCCTGAACTCAGCTGGGTGGAGCTGTCCCCATCTCCTGTTCAGTCTGGGGACATGTTGGACTGACTGCTCAGGCTGGCAGCTTCCAGAGACTGGAGTGGAGAAGAGTGAGTCCTCTCTACACTGCAGCAAAACTCAAACTGGCCTCAGCCCTCAGTAGAACAATTAAATcatcaaacaaaacaacaactgtaCAGGCGACCCTTTCTGAAATTACAAATTAGATAAGGAATTTCCCTGAACGTTTAAAATCTGACAGCTAAATGACACAACCAAAGGAGGACTTCATTTTTCCGTATCTCCGGAGTTTGAAACATAAAACGAAACATCTGCTCCAGTTGACTACCAGCACATCTGGTCAGGCAGTGTAAATTATTTTTAAAAGTACATCGCTTCAAGTATGTAAACAaacaatgatatatatattttttttaaagagggaGACTCATTCCATCAGTGCTGTCAAGCCTGGGCCAGTGCAGAGACTCCTGAGGTTTGGCTCTGTCTCCtgctctctcgcacacacacgcaccctcTTAAAAAATGAGGGGGAAGAGCGAGGGTACTCCATGTATCTCCAGTTGAGGACAATCCAACGCTCTGTGTCTCCTCACACATCAGCTCCTGTCACTCAGAGAAAAGTGTGTGTGGCGATGAGGGGCTGGGCTCTATGACCTGCAAAGACACACCCCTCCGTCAGCCTGCTCATATGTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU715171 False 1895 lncRNA 0.42 2 58587072 58588990
TU715172 True 1857 lncRNA 0.42 3 58587072 58588990

Neighbor

gene id symbol gene type direction distance location
LOC110528071 LOC106583097 coding downstream 130214 58452974 ~ 58456858 (-)
LOC110528070 LOC106583098 coding downstream 134845 58440240 ~ 58452227 (-)
LOC110528069 LOC106583062 coding downstream 149918 58425680 ~ 58437154 (-)
LOC110528067 LOC106583063 coding downstream 241869 58322868 ~ 58345203 (-)
LOC110527128 LOC106583056 coding downstream 273554 58310330 ~ 58313518 (-)
LOC110528074 LOC106583092 coding upstream 2076 58591066 ~ 58619101 (-)
LOC110528080 NA coding upstream 38345 58627335 ~ 58629263 (-)
ccnd3 LOC106583090 coding upstream 66819 58655809 ~ 58662211 (-)
LOC110528082 LOC106583086 coding upstream 92741 58681731 ~ 58687794 (-)
LOC110528083 LOC106583085 coding upstream 104238 58691817 ~ 58695856 (-)
G628969 NA non-coding downstream 19210 58566568 ~ 58567862 (-)
G628966 NA non-coding downstream 24041 58562403 ~ 58563031 (-)
G628878 NA non-coding downstream 90828 58470185 ~ 58496244 (-)
G628996 NA non-coding upstream 30575 58619565 ~ 58619795 (-)
G628997 NA non-coding upstream 31344 58620334 ~ 58620634 (-)
G629001 NA non-coding upstream 51682 58640672 ~ 58641472 (-)
G629117 strip1 non-coding upstream 223804 58812794 ~ 58816065 (-)
G628714 NA other downstream 468950 58117190 ~ 58118122 (-)
G628575 LOC106579815 other downstream 713741 57872050 ~ 57873331 (-)
LOC110528040 NA other downstream 1528502 57052191 ~ 57059527 (-)
vamp3 vamp3 other downstream 1717621 56853567 ~ 56869607 (-)
sfrs3 sfrs3 other upstream 118582 58707572 ~ 58713630 (-)
G630132 NA other upstream 1158460 59747450 ~ 59752591 (-)
G630227 NA other upstream 1326989 59915979 ~ 59917551 (-)
G630747 NA other upstream 1494056 60083046 ~ 60083857 (-)

Expression


Co-expression Network