G629117 (strip1)


Basic Information

Item Value
gene id G629117
gene name strip1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58812794 ~ 58816065 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU715338
TCTTTTTATCCAGTATTTTTAGTCATACAATGTAAAACAGATTGACAAAAGCCATGATAAATAAGTTTTTTTCCCCAACATCTGTTTTCATTTCTCCATCTTAGATTTAATAACCATaagaccaaaaaaaaaaattgaagcaGCAAATAGGTATAAGCACAATGCAACTATAAAATTCTTAAATCTGAGGAGTTATCAGGTGGGCAAAATTGTTCCcttgagtaaaaaaaacaaacacctgTTAGCTTAAGTGAGAACCACAAATAATAACATAGGGCTCATTTAGTTTCTTTCTTCACTCTCTCaaaaatactgtatacacacacacaataaagtaCATTTTCCAAGTTCTTATTCAACCAGGTTGTGGAGTGCGCCAGCACGTTTTTCTGTTGCTTTAGGTTAAAACGTTAGTCTGTAAATTTAATTAAAATGTCTTAATACCAAACCAAATGGTCTCCGCCTGGGTTGCATACAGGTATGTGATTCATACAAGCCAATGGACACTCAGTGCGTAGAGTAACAGTGGAACATCAAAAAGGACTCAAAAGCCTGATCAACAGGAGGTTAAAGCAGTAACCATAAGtcagacacatactgtacacactcaaGCAACTCCTCCCTTACAAACAGAACACTTTTTATTTTGAACTTGTTCCTAAGGGTtatcatactatactgtagtgctTGAAGGGCAAAGTACTGGGCCGCCACCCAGAAGTGGGGTTAAGTGTGTAAGAAGTCCGGAATACAAAGGGTTAACATCCCCACCCTGGGAGGTTTGACAAGGCTGATAAGACCTATAGCACTCTGTAAAAAGGTCCAGTTCAAAAcgaaaaagggttctacatgggaTAAATCTACCCCAAGGTTTCCCCAAACTTGATTCTGGACGTTTTGGTTATTGCCCTatCAGTAAGGGAAGTCCAGCACAGAAATACTGTTCTTGGCTGTGATGTAAGACATGATGTTCTGGTTGAAGAACTTGAgaatgagaggaatacagttgGCAAACACCAGGTGCTGAGCCATGTACTCAAACTGGTAGATGTGATTGAGTTTGAAGTGTTTGAGAAGCAGCAGCAGGATGGCAGAGATGGCCTTAACAATGATCTCCTTGTGGCGGTTAACATCTACACCAAGCTTCATGCTCTGGAGCACCGTGGTCCTGCAGATACAGTATCAAATCAAACCCTTTCAATTGGAGCTCAACTGAATACAGCTCCCTTTCAAAACGAACAGTTGACTCACGGCATCTCCTCAGGCAGCACATCTGCCAGGATGTTGATGGAGTCTGTCTTGGCCTTGGAGGTGGGGGCTGCCGCCAGCAGGATCTTCAGCAGGGCAAT

Function

symbol description
strip1 Acts upstream of or within heart contraction. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in cardiac ventricle. Orthologous to human STRIP1 (striatin interacting protein 1).

NR:

description
PREDICTED: striatin-interacting protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU715338 True 1349 lncRNA 0.41 4 58812794 58816065

Neighbor

gene id symbol gene type direction distance location
sfrs3 sfrs3 coding downstream 99164 58707572 ~ 58713630 (-)
LOC110528083 LOC106583085 coding downstream 116938 58691817 ~ 58695856 (-)
LOC110528082 LOC106583086 coding downstream 125000 58681731 ~ 58687794 (-)
ccnd3 LOC106583090 coding downstream 150583 58655809 ~ 58662211 (-)
LOC110528080 NA coding downstream 183531 58627335 ~ 58629263 (-)
LOC118965303 LOC106565665 coding upstream 27614 58843679 ~ 58845368 (-)
LOC110528983 LOC106565665 coding upstream 30402 58846467 ~ 58868216 (-)
LOC110528090 LOC106583075 coding upstream 73936 58890001 ~ 58895798 (-)
LOC110528094 LOC106583073 coding upstream 132391 58948456 ~ 58970820 (-)
eps8l3a LOC106583072 coding upstream 206629 59022694 ~ 59037726 (-)
G629001 NA non-coding downstream 171322 58640672 ~ 58641472 (-)
G628997 NA non-coding downstream 192160 58620334 ~ 58620634 (-)
G628996 NA non-coding downstream 192999 58619565 ~ 58619795 (-)
G628988 NA non-coding downstream 223804 58587072 ~ 58588990 (-)
G629124 NA non-coding upstream 5403 58821468 ~ 58823848 (-)
G629056 LOC106583079 non-coding upstream 21773 58837838 ~ 58848423 (-)
G629152 NA non-coding upstream 92169 58908234 ~ 58908581 (-)
G629185 NA non-coding upstream 108285 58924350 ~ 58924635 (-)
LOC110528069 LOC106583062 other downstream 383423 58425680 ~ 58437154 (-)
G628714 NA other downstream 694672 58117190 ~ 58118122 (-)
G628575 LOC106579815 other downstream 939463 57872050 ~ 57873331 (-)
G630132 NA other upstream 931385 59747450 ~ 59752591 (-)
G630227 NA other upstream 1099914 59915979 ~ 59917551 (-)
G630747 NA other upstream 1266981 60083046 ~ 60083857 (-)
LOC110528989 LOC106583145 other upstream 1922430 60699279 ~ 60822525 (-)
G631740 NA other upstream 2374643 61190708 ~ 61191045 (-)

Expression


Co-expression Network