G628478


Basic Information

Item Value
gene id G628478
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58843280 ~ 58852652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU714576
GTGAGTTCTCCATCTGGTTTTAATACTTCACTTCTGTAAGAGGGTTGAAATTGTCCAACGGAGAACTGTGCTCTTGGTTTAAATTAAGACACACTTACATACTAAGCATGAAGCACTGCCATTCTGCTCATGAGTATCAGTAAACAGAGATTTGAGGATCAACCATTGGAAGGTTTATATTCCTCAGTAAAATGGAGATTGCTTTACAGTCAGACTTCGATCAGATTTGGTCAAAGCTCCTTAATCATCACATCTGCTGTAATACATTCCAATTTGTGCCTATAAATACTAGTCTTTCttggatgcaccagagctcaattttgagtctcatagcaaagggtctgttttttgtatttttaataccaTTTCCAGACAtttataaaaaacagtttttcgctttgtcattatggggtattgtgcatagAGTGATGAGGAcctttgaataaggctgtaacttaaaatgtggaaaaagtctgaattctttccgaatgcactgtatagataCTCACATTCAGTTTCACTTAATGCCAACGTAAATATGATTTTCTCTACATTCCCCTAAACTGTGTCTGCAataagcagagcagagcagaataagAATACTGTTGCCTGGCCTCTAGACCAGAACAGACTGCGTGTCCAGCACTGAATACACTCCATTAGGGATAGATACACACCTGTAATATCTCAGACACCTGACCATGTGGTTCCTTGTCAAAGCAGCCCCTGCTGCGGTAAACTCTAACATCTGGGTCtgttggagagggggagaggggtgtctTGTGACTAGGGTCACTCATAGCGTGAGGGTGGAGGTGTTTTGGGCAGCGCTGCAGGTCCCTCTGGTGGTGAGACTCTGTAGGGTTAAATGTGAGTTGGCCTGTAGGAGGGTGATCGTTAGGGGTTTAGGGGCAGGAACATGAAGAGGAGTGATCATGAGTCGGACTCAGGGACAGTGGGGGTGACGGGGGTGGTGGGGGTTATGGGGCCGATGTTGTTCTGGTAGCCCGTCCGGTAGCAGCTGTTGGCGGACGAGGAGTTGGAGTTCTCCAGGGGTTTGGTGCCTGGGGGGACTAGGTTGGCTTGGGACGGGGGCTTGGGCAAAGGTGTCTCTCTTGGGTTCTTGCCCAGGATGAAGTGCATCTCGTCCACCTTCTCCAGGTTGGAGATGTCCTTCATCATGCCCTTGCGGTAGGAGACGGACAACTTGTTGGAGCCATCAGACATCAGGTTGAAGTGGCGGGCGATGAAGACGATGGGGAGAGGAAGCATGGCCATCACGATGAGGGAGAAGCACATGGCCAATGCCCAGGGAGGGTAGCTCTGGAAACGCTCCTGAGCctatagagagagaaacaagggaAATAAGGAGAAAAATGAAATACTCCTGGTGCTGACTTCAAACTCTGTAACAAGGCTAGTACACAAAATGTCAAGTGTCTATATGAAACTCTTCACTGTTTTCCAACAGGTTGACTGACCAGTTCCTCCACCCATGCATTGTACCCTGGCGGGCTGATGGCCATCTCAATGACAGTAGCCATAATGAGAACGATGAGACAACGGGAGACGTACTTCCACATGTAGAAATAGAAGGCATGGGGCCGGAAACCCAACATATCCTCAAGGTCCTGCATAAACCTTACACACATACAGGTGGGTTTAAAATAGGTCCAGACAAATCCTTCAGTTTACAGTATTCACATGTTCCTTGActctttctcttcaccctcttATCAAACTTTCCTCTTATATCATATGAAAACACACATTGCAATATCAGTGAGTTCACTTTTAAAAGCTACCTCACACTATGCGGCTCTCTGGGGAGACGCCATCCGGTACCTCTTGGTGCCGTAGATCCAGGCCACTGACACATTCTCTAGGATGACCGCGACAGTGAGTGGCAGACCAGCAGAATAGTTATCAAACATGATGACAAAGTAGTTCCCAGAGCGCTGGACGAAGAGCAGGCCACAGATAAAGGCTATGATTACAGCAGCACACTGAAAACAGATAAAACTACACTTTATGGAACAACGCAGACTATGAaaggacacacacagatgcatacacacacacacgctaacatgcactctacacacacatacattgtaatattgttgtattgtggtattatacagtggtataaagtacttacTGGAAGTAAAAATACATTAAAGTAccacttaagtcgttttttggggtatctgtactttactattaatacttattttacttcactacacTCCTACAgaaaataatattatttttt

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU714576 True 2275 lncRNA 0.45 2 58843280 58852652

Neighbor

gene id symbol gene type direction distance location
LOC110528089 LOC106583079 coding upstream 1961 58835280 ~ 58841319 (+)
LOC110528088 LOC106583080 coding upstream 8977 58825054 ~ 58834303 (+)
LOC110528087 LOC106583081 coding upstream 27194 58804760 ~ 58816086 (+)
LOC110528086 LOC106583082 coding upstream 43158 58737859 ~ 58800122 (+)
LOC110528084 LOC106583083 coding upstream 105651 58728133 ~ 58737629 (+)
LOC110528091 LOC106583076 coding downstream 26281 58878933 ~ 58889711 (+)
LOC110528092 LOC106583074 coding downstream 62530 58915182 ~ 58920830 (+)
LOC110528093 gnai3 coding downstream 73288 58925940 ~ 58932441 (+)
LOC110528095 LOC106565671 coding downstream 117074 58969726 ~ 59022859 (+)
LOC110528097 LOC106583070 coding downstream 182421 59035073 ~ 59042858 (+)
G628476 NA non-coding upstream 124632 58712897 ~ 58718648 (+)
G628458 NA non-coding upstream 219945 58622608 ~ 58623335 (+)
G628457 NA non-coding upstream 223054 58619967 ~ 58620226 (+)
G628451 NA non-coding upstream 232912 58610111 ~ 58610368 (+)
G628371 NA non-coding upstream 252933 58590098 ~ 58590347 (+)
G628566 NA non-coding downstream 38476 58891128 ~ 58894932 (+)
G628572 NA non-coding downstream 53775 58906427 ~ 58906692 (+)
G629165 NA non-coding downstream 69584 58922236 ~ 58922541 (+)
G629170 NA non-coding downstream 80075 58932727 ~ 58933102 (+)
G628468 LOC106583084 other upstream 129696 58708295 ~ 58713584 (+)
LOC110528980 LOC106583093 other upstream 339203 58502198 ~ 58589001 (+)
LOC110528055 LOC106583107 other upstream 851408 57917801 ~ 58055214 (+)
G627035 NA other upstream 1247229 57542882 ~ 57596051 (+)
snrpe ruxe other upstream 1520259 57319669 ~ 57323047 (+)
LOC110528099 LOC106583069 other downstream 216018 59068637 ~ 59084729 (+)
G629678 NA other downstream 831679 59684331 ~ 59684763 (+)
G629679 NA other downstream 832220 59684872 ~ 59685187 (+)
LOC110528122 LOC106583221 other downstream 853301 59705922 ~ 59712261 (+)

Expression


Co-expression Network