XLOC_002547 (CU466285.1)



Basic Information


Item Value
gene id XLOC_002547
gene name CU466285.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5525393 ~ 5527364 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00004744
AATTCTCCCTGCTCGCCTCGGCCACAGCATTCAGTCTTGGCAGCACAAACAGCAGATCAATCAATATCACCTTGAGAAATGTCTTCAACAGAAACAGCAACAGATATCACAAACAACCACCTCAACATCATCTcgtatttatcgagtatggccatacacctaaagcacttcacaatcatgaggggggtctctccacacacgaccagtgtgcagcatttacTTGCATGATGCAACGGCACCCACAGGACAAAGAGGCAAGTGCGCTCACCACACGCCAGCTATAGGTAGGTACACTCTTCCAagaaacacataatattttattcttaacaatatttcatttaattatagtcattttaactatttagta

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092808

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00004744 True 367 lncRNA 0.42 4 5525393 5527364

Neighbor


gene id symbol gene type direction distance location
XLOC_002546 NA coding downstream 301451 5221915 ~ 5223942 (-)
XLOC_002545 sec31a coding downstream 389605 5092511 ~ 5135788 (-)
XLOC_002544 tmem150c coding downstream 466570 5041977 ~ 5058823 (-)
XLOC_002543 hnrnpd coding downstream 500873 5000623 ~ 5024520 (-)
XLOC_002542 mat2al coding downstream 545243 4969634 ~ 4980150 (-)
XLOC_002548 syk coding upstream 6479 5533843 ~ 5581487 (-)
XLOC_002549 st8sia4 coding upstream 140037 5667401 ~ 5684326 (-)
XLOC_002550 NA coding upstream 261256 5788620 ~ 5821584 (-)
XLOC_002551 ankrd55 coding upstream 296395 5823759 ~ 5847904 (-)
XLOC_002552 si:ch211-281k19.2 coding upstream 324995 5852359 ~ 5855125 (-)
XLOC_002540 NA non-coding downstream 603342 4919323 ~ 4922051 (-)
XLOC_002539 NA non-coding downstream 706787 4812304 ~ 4818606 (-)
XLOC_002538 NA non-coding downstream 942373 4573554 ~ 4583020 (-)
XLOC_002537 NA non-coding downstream 947541 4508389 ~ 4577852 (-)
XLOC_002554 CABZ01032180.1 non-coding upstream 423099 5950463 ~ 5950578 (-)
XLOC_002555 NA non-coding upstream 509517 6036881 ~ 6037746 (-)
XLOC_002556 NA non-coding upstream 861905 6389269 ~ 6409797 (-)
XLOC_002558 BX005434.1 non-coding upstream 945342 6472706 ~ 6472832 (-)

Expression



Co-expression Network