G630107 (LOC108425565)


Basic Information

Item Value
gene id G630107
gene name LOC108425565
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 59800076 ~ 59801992 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU716445
CACTGGTATTATAAAGTTTATTGAATGTTTTCTtcattttttgaaaataaaacaaaaacacagggGATCTGTATGTTGACTTACATGAACTCTTTGTGCATGTCTGAGCTGACCAAATTAGGGTACATGGGGAGGTTATTCTGATGGCTGGCTTAAAAAAATACTTGTATGCAATTACATCAAAAATGTGTGCATAGTTTCCACAGAAAAGTAAActaaactaactaactaactgtcacTAAAATCATTCTACTACAACTGTTGTCAATGTAGCTTTGCCAGATAATGATATATCTTACTTAGCAGAATAATGGGTTTGCATAAAATATGATTTCATGCAGTTCTGATTGAAGACACGGTTTAAAAGCTCCACTAAAAAGTTTCATACGTTAGATGGTTGATAAAAATTAGGTATCGTTGAAAATAAAAACCTATTTTAAAAAATTGTTTGACTGAAAACAACGCACTACTTCCTAAAAAAAAATCCCCTACCAGGAAAGAAGGGGCTGGCAGTAAACGTAGCAGGGTTCGTTCCCCATAAACTATTCAGGTGTTGGTGCGAGAATTCTGTTCTCTAAATTCTGTGCTCTAACCATTCAATTCTGTCATGTTTGAATAACTAACACTTGAACCAAATAGGATTCTAGGGCAAAACATTTGAGGGGCTAAGTCGGTCTCCTTCATGTACAATGAAAATACCAAGTCAGCTTATCAGGGTTTGGAATTATTACAAAGTGACTGGAACCCCAACATTATTTTACAACAAATATCATCCAGTTTAAATTAAAACTTGCTTTATTTACTATTTTTTGTTAATTTAGAAAGTTTATAAAACTTCACCTATAGATGGCAACCATCCTGAAGTCAGGAAGTTACATCACCTAACAATAAGGTGTAAAAACACTGCTACAAAAGGTTATTTATCCATCATATTCCAAAAATGTGTTTCCCCAATCTAATATTCCAGTTAAGTATCAATGGCAAATATGTTGTTTACAACAATGTGTTACACAGGTGTGACCCTCATTCAGAATCAAATGAATGATGTGGGACACAAAATTGTATTTTTCAACAGATTTGAGATCTATCAGATTTATTCAATGGGCCATATGCTAGAAAAGGGCATGTGGGTCAAAAAGAGCTAACAGTTGGGGAAGATTTAGATTAACTTTTTAAGTTTCCATtctttgggtggggggggggggggggtgtatgtatGTCAGGGTGTTGGAAGACAGGTAGCCATCTACTCTGCCACCTTTTTGCTCTCCTCAGTTGGCTGTCCAGTAGCGGTTTCCACAGTCTTGGAGGCcttctttttcttcttcttctgtgtttTGCGACTAGCTGAGCTCTGCAGTAGAGTCTAAGCTCTGCGTCCTGCACTTCGTGCTCTGACTTGTAGAGCTCTGGCTCAAAGGGTCCGCTGGTGATTCTATGGGGGCCGTTGGCCATCAGCAGCACTGTGAACTTAAACTGGGCCACAAACTCTCCCTCCTTCTCGTTGAGCACACTGAAAGGCTGAAGCAGTTCGTGTTTGGCACACTCGACCACGCCCAGGCGGGCTTTAGCCTCG

Function

NR:

description
proliferation-associated protein 2G4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU716445 True 1576 lncRNA 0.39 4 59800076 59801992

Neighbor

gene id symbol gene type direction distance location
LOC110528124 LOC106565535 coding downstream 70663 59726412 ~ 59729413 (-)
LOC110528120 lmbr1l coding downstream 105955 59672674 ~ 59694121 (-)
LOC110528119 rhebl1 coding downstream 128509 59667401 ~ 59671567 (-)
LOC110528118 prkag1 coding downstream 135862 59656971 ~ 59664214 (-)
LOC110528116 LOC106583226 coding downstream 200451 59556060 ~ 59599625 (-)
LOC110528128 LOC106583146 coding upstream 88446 59890438 ~ 59895213 (-)
ruvbl1 ruvb1 coding upstream 307882 60109874 ~ 60122317 (-)
LOC110528140 LOC106583208 coding upstream 480652 60282644 ~ 60295290 (-)
LOC110528141 LOC106583207 coding upstream 529037 60331029 ~ 60336416 (-)
LOC110528144 LOC106583201 coding upstream 593972 60395964 ~ 60458245 (-)
G630108 LOC106583219 non-coding downstream 2382 59793566 ~ 59797694 (-)
G630114 NA non-coding downstream 82923 59716862 ~ 59717153 (-)
G630044 NA non-coding downstream 85551 59713595 ~ 59714525 (-)
G630042 LOC106583221 non-coding downstream 86717 59709104 ~ 59713359 (-)
G630109 NA non-coding downstream 96986 59702786 ~ 59703090 (-)
G630245 NA non-coding upstream 86881 59888873 ~ 59889181 (-)
G630695 NA non-coding upstream 187696 59989688 ~ 59989977 (-)
G630705 LOC106583215 non-coding upstream 198519 60000511 ~ 60001246 (-)
G630706 NA non-coding upstream 200175 60002167 ~ 60002600 (-)
G630708 NA non-coding upstream 201776 60003768 ~ 60003972 (-)
G630132 NA other downstream 47485 59747450 ~ 59752591 (-)
sfrs3 sfrs3 other downstream 1086502 58707572 ~ 58713630 (-)
LOC110528083 LOC106583085 other downstream 1104309 58691817 ~ 58695856 (-)
LOC110528069 LOC106583062 other downstream 1370705 58425680 ~ 58437154 (-)
G628714 NA other downstream 1681954 58117190 ~ 58118122 (-)
G630227 NA other upstream 113987 59915979 ~ 59917551 (-)
G630747 NA other upstream 281054 60083046 ~ 60083857 (-)
LOC110528989 LOC106583145 other upstream 936503 60699279 ~ 60822525 (-)
G631740 NA other upstream 1388716 61190708 ~ 61191045 (-)
G631687 emc3 other upstream 1396015 61198007 ~ 61199438 (-)

Expression


Co-expression Network