G630227


Basic Information

Item Value
gene id G630227
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 59915979 ~ 59917551 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU716577
GCCTGTTTACTAGCCCAGTCCCCCATGGGACATCCTACTACACTAGATTCCATGAAAGATAAGAATGTTTCATCAAACTTCAAACATTGAAAATAGCTAAAGCTTCTCCTCCTTCAGACTCTTGGTAATCCCAGTAAGGTCTTGTAGGCTCCAAAGCTGTGTCCATGACCTAGAGCAGGTATTACATCATCATCAGTCACCTGGCTGGGTGCTAGTCAACATCATCTCCAAAGAGACGATCCATTCTATCATAACTCACAGGCATGCTGTTACTCTAAAATATAGGCATCGCTTTGGGCCTCTCAGTCTGAAACCCTTTTATGGAGACACCAATATGCACTACTTCACAAAGCATTGTACTGATGATCAAATCCCATGCAAAGAAGGTAAGTCAGAGAAGACATAGTTCCATCCAAACTGTATGTTAGCTGATATTTAAAtgtatattccggactctgacattgctcattctgatatttcttaatttctttctttacattttttggaTTGCGATAACATCTGGAAATCTGTATACACAACCAATAATACTGTATTTCCTGTAGTGTTAAACCCTGGCATATGTGAGAATTCATTTACTAACCTACACgagtcagaaacatttagatAAGGGATCTAAGAGGATCTAAAGCAGAGGGAGGGAGTTGGTTACAACCAAAGCCTGTAGGAGAAGAAGGGATGGGGATTAGAGATCCTGAAGCAGAGTGGAGGATGTGTGTCAACTCTGTGGAGGAGGGATGGGTGTCAACTCTGTAGAGCAGGGGAAGGGATGAGTGTCAACTCTATGGAGGAGGGATGGGTGTCAACTCTGTGGAGCAGGGGGAGGGATGGGTGTCAACTCTGTGCAGCAGGAATGGGTGTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGGATCAGACGGAGGGATGGGTGTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGTGGAGCAGGGGGAGGGATGAGTGTCAACTCTGTGAAgcaggaagaggggtggaggtCAACTCTGTGGAGCAGGGGGAGGGATGGGTGTCAACTCTGTGGAGCAGGGATGGGTGTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGGATCAGACGGAGGGATGGGTGTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGGATCAGACGGAGGGATGGGTGTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGTGGAGCAGACGGAGGGATGAGTGTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGTGGAGCAGGGGGAGGGATGGGTGTCAACTCTGTGCAGCAGGGATGAGTTTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGGATCAGACGGAGGGATGGGTGTCAACTCTGTGGAGCAGGGGGAGGGATGGGTGTCAACTCTGGATCAGACGGAGGGATGGGTGTCAACTCTGTGGagc
>TU716578
GCCTGTTTACTAGCCCAGTCCCCCATGGGACATCCTACTACACTAGATTCCATGAAAGATAAGAATGTTTCATCAAACTTCAAACATTGAAAATAGCTAAAGCTTCTCCTCCTTCAGACTCTTGGTAATCCCAGTAAGGTCTTGTAGGCTCCAAAGCTGTGTCCATGACCTAGAGCAGGTATTACATCATCATCAGTCACCTGGCTGGGTGCTAGTCAACATCATCTCCAAAGAGACGATCCATTCTATCATAACTCACAGGCATGCTGTTACTCTAAAATATAGGCATCGCTTTGGGCCTCTCAGTCTGAAACCCTTTTATGGAGACACCAATATGCACTACTTCACAAAGCATTGTACTGATGATCAAATCCCATGCAAAGAAGGTAAGTCAGAGAAGACATAGTTCCATCCAAACTGTATGTTAGCTGATATTTAAAtgtatattccggactctgacattgctcattctgatatttcttaatttctttctttacattttttggaTTGCGATAACATCTGGAAATCTGTATACACAACCAATAATACTGTATTTCCTGTAGTGTTAAACCCTGGCATATGTGAGAATTCATTTACTAACCTACACgagtcagaaacatttagatAAGGGATCTAAGAGGATCTAAAGCAGAGGGAGGGAGTTGGTTACAACCAAAGCCTGTAGGAGAAGAAGGGATGGGGATTAGAGATCCTGAAGCAGAGTGGAGGATGTGTGTCAACTCTGTGGAGGAGGGATGGGTGTCAACTCTGTAGAGCAGGGGAAGGGATGAGTGTCAACTCTATGGAGGAGGGATGGGTGTCAACTCTGTGGAGCAGGGGGAGGGATGGGTGTCAACTCTGTGCAGCAGGAATGGGTGTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGGATCAGACGGAGGGATGGGTGTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGTGGAGCAGGGGGAGGGATGGGTGTCAACTCTGTGGAGCAGGGATGGGTGTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGGATCAGACGGAGGGATGGGTGTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGGATCAGACGGAGGGATGGGTGTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGTGGAGCAGACGGAGGGATGAGTGTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGTGGAGCAGGGGGAGGGATGGGTGTCAACTCTGTGCAGCAGGGATGAGTTTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGGATCAGACGGAGGGATGGGTGTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGGATCAGACGGAGGGATGGGTGTCAACTCTGTGGAGCAGGGGGAGGGATGGGTGTCAACTCTGGATCAGACGGAGGGATGGGTGTCAACTCTGTGGagc
>TU716579
GCCTGTTTACTAGCCCAGTCCCCCATGGGACATCCTACTACACTAGATTCCATGAAAGATAAGAATGTTTCATCAAACTTCAAACATTGAAAATAGCTAAAGCTTCTCCTCCTTCAGACTCTTGGTAATCCCAGTAAGGTCTTGTAGGCTCCAAAGCTGTGTCCATGACCTAGAGCAGGTATTACATCATCATCAGTCACCTGGCTGGGTGCTAGTCAACATCATCTCCAAAGAGACGATCCATTCTATCATAACTCACAGGCATGCTGTTACTCTAAAATATAGGCATCGCTTTGGGCCTCTCAGTCTGAAACCCTTTTATGGAGACACCAATATGCACTACTTCACAAAGCATTGTACTGATGATCAAATCCCATGCAAAGAAGGTAAGTCAGAGAAGACATAGTTCCATCCAAACTGTATGTTAGCTGATATTTAAAtgtatattccggactctgacattgctcattctgatatttcttaatttctttctttacattttttggaTTGCGATAACATCTGGAAATCTGTATACACAACCAATAATACTGTATTTCCTGTAGTGTTAAACCCTGGCATATGTGAGAATTCATTTACTAACCTACACgagtcagaaacatttagatAAGGGATCTAAGAGGATCTAAAGCAGAGGGAGGGAGTTGGTTACAACCAAAGCCTGTAGGAGAAGAAGGGATGGGGATTAGAGATCCTGAAGCAGAGTGGAGGATGTGTGTCAACTCTGTGGAGGAGGGATGGGTGTCAACTCTGTAGAGCAGGGGAAGGGATGAGTGTCAACTCTATGGAGGAGGGATGGGTGTCAACTCTGTGGAGCAGGGGGAGGGATGGGTGTCAACTCTGTGCAGCAGGAATGGGTGTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGGATCAGACGGAGGGATGGGTgtCAACTCTGTGGAGCAGGGGGAGGGATGGGTGTCAACTCTGTGGAGCAGGGATGGGTGTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGGATCAGACGGAGGGATGGGTGTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGGATCAGACGGAGGGATGGGTGTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGTGGAGCAGACGGAGGGATGAGTGTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGTGGAGCAGGGGGAGGGATGGGTGTCAACTCTGTGCAGCAGGGATGAGTTTCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGTGGAgcaggaagagggatgggtgtCAACTCTGGATCAGACGGAGGGATGGGTGTCAACTCTGTGGAGCAGGGGGAGGGATGGGTGTCAACTCTGGATCAGACGGAGGGATGGGTGTCAACTCTGTGGagc

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU716577 False 1543 TUCP 0.49 2 59915979 59917551
TU716578 False 1509 TUCP 0.49 2 59915979 59917551
TU716579 True 1447 TUCP 0.49 3 59915979 59917551

Neighbor

gene id symbol gene type direction distance location
LOC110528128 LOC106583146 coding downstream 20766 59890438 ~ 59895213 (-)
LOC110528124 LOC106565535 coding downstream 186566 59726412 ~ 59729413 (-)
LOC110528120 lmbr1l coding downstream 221858 59672674 ~ 59694121 (-)
LOC110528119 rhebl1 coding downstream 244412 59667401 ~ 59671567 (-)
LOC110528118 prkag1 coding downstream 251765 59656971 ~ 59664214 (-)
ruvbl1 ruvb1 coding upstream 192323 60109874 ~ 60122317 (-)
LOC110528140 LOC106583208 coding upstream 365093 60282644 ~ 60295290 (-)
LOC110528141 LOC106583207 coding upstream 413478 60331029 ~ 60336416 (-)
LOC110528144 LOC106583201 coding upstream 478413 60395964 ~ 60458245 (-)
si:dkey-197j19.6 LOC106583152 coding upstream 540959 60458510 ~ 60471468 (-)
G630245 NA non-coding downstream 26798 59888873 ~ 59889181 (-)
G630107 LOC108425565 non-coding downstream 113987 59800076 ~ 59801992 (-)
G630108 LOC106583219 non-coding downstream 118285 59793566 ~ 59797694 (-)
G630114 NA non-coding downstream 198826 59716862 ~ 59717153 (-)
G630044 NA non-coding downstream 201454 59713595 ~ 59714525 (-)
G630695 NA non-coding upstream 72137 59989688 ~ 59989977 (-)
G630705 LOC106583215 non-coding upstream 82960 60000511 ~ 60001246 (-)
G630706 NA non-coding upstream 84616 60002167 ~ 60002600 (-)
G630708 NA non-coding upstream 86217 60003768 ~ 60003972 (-)
G630712 NA non-coding upstream 92520 60010071 ~ 60010379 (-)
G630132 NA other downstream 163388 59747450 ~ 59752591 (-)
sfrs3 sfrs3 other downstream 1202405 58707572 ~ 58713630 (-)
LOC110528083 LOC106583085 other downstream 1220212 58691817 ~ 58695856 (-)
LOC110528069 LOC106583062 other downstream 1486608 58425680 ~ 58437154 (-)
G628714 NA other downstream 1797857 58117190 ~ 58118122 (-)
G630747 NA other upstream 165495 60083046 ~ 60083857 (-)
LOC110528989 LOC106583145 other upstream 820944 60699279 ~ 60822525 (-)
G631740 NA other upstream 1273157 61190708 ~ 61191045 (-)
G631687 emc3 other upstream 1280456 61198007 ~ 61199438 (-)
G632459 NA other upstream 1773697 61691248 ~ 61691644 (-)

Expression


Co-expression Network