G630705 (LOC106583215)


Basic Information

Item Value
gene id G630705
gene name LOC106583215
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 60000511 ~ 60001246 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU717106
agtcagaACTACAAGTTTACAAttttgcacacacacatgcatacacacaccaaTAACACACAAGGCCAAACTATACAACTTAAAATCCAAGGCAGTAGTGAAGCTCAAGGTATAAACAAAAATGTCCCCATACCTTTCAGGCTCCTGCTCAGACGATTGAGCATTTCTCTCATACCCAGGGAAGCTACTCATATCCACATAACCATCGGTGTCATTGGCGGAAGACAGCGCCCGACTCGGATGATCAAAAAACTCTGCAAAGGTCCCCGGTCGTACAGGCCTCCGAGAGGGGATCTGGATGTTCTCATAGTCGGAGTTGAGAGTCTGGGCGGGGATATTCTCGTAGTCTGATGTGTCAGCGTTGGGGAAGGAGATGGAGCGGGGTTTAGtcagggggaggggggtgaaggGGGCGAGAGTGCGATCCTCGAAGGACTCTACCCGGGCCACGCTGCGGTTGAGGAAAGCCACAGAACCCCTTTTTCTTTTCCCGTCCTTATAGAACAGAAAGGTGGATGGGGACTCTGGAGAGCGTTGGGGCTTACTGACTGTCCAGGACTTGAGCTGCGGGGAGCTGCCTGTGCTGCGCCTGTCTGAATCAAGGACCCTGGCAGGGCCGTGGTGGCTGGACTCAGAGGAGGACCTGGAGGAGGACACGTTGACATCCACCAGCAGCTTGCTCTCCGTCTTTCTCCTGAATTTCAACATCAGGAAGCGCTTGAAGGaggacttcttc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU717106 True 736 lncRNA 0.53 1 60000511 60001246

Neighbor

gene id symbol gene type direction distance location
LOC110528128 LOC106583146 coding downstream 105298 59890438 ~ 59895213 (-)
LOC110528124 LOC106565535 coding downstream 271098 59726412 ~ 59729413 (-)
LOC110528120 lmbr1l coding downstream 306390 59672674 ~ 59694121 (-)
LOC110528119 rhebl1 coding downstream 328944 59667401 ~ 59671567 (-)
LOC110528118 prkag1 coding downstream 336297 59656971 ~ 59664214 (-)
ruvbl1 ruvb1 coding upstream 108628 60109874 ~ 60122317 (-)
LOC110528140 LOC106583208 coding upstream 281398 60282644 ~ 60295290 (-)
LOC110528141 LOC106583207 coding upstream 329783 60331029 ~ 60336416 (-)
LOC110528144 LOC106583201 coding upstream 394718 60395964 ~ 60458245 (-)
si:dkey-197j19.6 LOC106583152 coding upstream 457264 60458510 ~ 60471468 (-)
G630695 NA non-coding downstream 10534 59989688 ~ 59989977 (-)
G630245 NA non-coding downstream 111330 59888873 ~ 59889181 (-)
G630107 LOC108425565 non-coding downstream 198519 59800076 ~ 59801992 (-)
G630108 LOC106583219 non-coding downstream 202817 59793566 ~ 59797694 (-)
G630114 NA non-coding downstream 283358 59716862 ~ 59717153 (-)
G630706 NA non-coding upstream 921 60002167 ~ 60002600 (-)
G630708 NA non-coding upstream 2522 60003768 ~ 60003972 (-)
G630712 NA non-coding upstream 8825 60010071 ~ 60010379 (-)
G630713 NA non-coding upstream 12001 60013247 ~ 60013493 (-)
G630718 NA non-coding upstream 61718 60062964 ~ 60064931 (-)
G630227 NA other downstream 82960 59915979 ~ 59917551 (-)
G630132 NA other downstream 247920 59747450 ~ 59752591 (-)
sfrs3 sfrs3 other downstream 1286937 58707572 ~ 58713630 (-)
LOC110528083 LOC106583085 other downstream 1304744 58691817 ~ 58695856 (-)
LOC110528069 LOC106583062 other downstream 1571140 58425680 ~ 58437154 (-)
G630747 NA other upstream 81800 60083046 ~ 60083857 (-)
LOC110528989 LOC106583145 other upstream 737249 60699279 ~ 60822525 (-)
G631740 NA other upstream 1189462 61190708 ~ 61191045 (-)
G631687 emc3 other upstream 1196761 61198007 ~ 61199438 (-)
G632459 NA other upstream 1690002 61691248 ~ 61691644 (-)

Expression


Co-expression Network