XLOC_025485 (nosip)


Basic Information

Item Value
gene id XLOC_025485
gene name nosip
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32532000 ~ 32536378 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050245
ggcgcagtagatagtgctgttgcctcacagcaagaatgttgctggttcgaacctcggctcagttggcgtttctgtgtggagtttgcatgttctccctgcctttgtgtgggtttcctccgggtgctccggtttcccccacagtccaaagacatgcggtacaggtgaattggataggctaaactgcccgtagtgtatgattgagtatgtgtgtgtggatgtttcccatgggttgcggctggaaaggtatccgctgcgtaaaaaacttgctggataaattggcggttcattccgctgtggcggccccggattaataaagggactaagccgataggaaaatgaatgaaagatataatataatatagttttgtACAGTGTATATAACCAATGCAtttcaacaaaaatgtttatgTGACTTGTGTTTGATAATTAACTTATTGCAATGAATTAACAATTTATCAATCAATTAAGTTAATAATTATGTTACAATTTGTGGGTTATTCTGTCGGAAGCGGACTGCATGGGTAACTGTTAAGTCAATGAGCACGACGAGAAtgtcaacttttattttgaagtttttTTATGACGAACCAGGAAAAGGAGCAAAGGATCTTTTCCGGTTTACGACCATAGGAGATTAAACATGACACGACATGGCAAGAACTGCACCGCGGGAGCCGTTTACACTTATCACGAGAAGAGGAAAGACACTGCGGCTTCGGGTTATGGGACACAGAGTGTGCGTTTGGGGAAGGATGCAATCAAAGATTTTGACTGCTGCTCTCTGTCCTTGCAGCCCTGCAGAGATCCTGTCCTAACTGAAGATGGATACTTGTATGAAAAAGAGGCCATTCTGCAGTACATCCTTCATCAGAAAACAGAAATTGCCAAGAAAATGAAGGCATATGAAAAGCAAAAACAGGCTCTGAAGAGTGAAGGCCAGCTGGAGTCCAAATCTGAGGAGCGAGAGAGAGCTGAGAAGTTCAAACAGAGAGAGAATAACATCGTCTCAAAACCTATTAACCCCTTTACTTCAGGTAAATCTAAAGATGAAGGAAACCAGAATGGCTCAACCAGCTCCTCCAGTACTGACACGTCATCAGGAGAGTCCAGTTCCTCTTCAGCTCTGCCCAGTTTCTGGATCCCCAGCCTCACACCAGAGGCCAAGCCCACATTGCTAAAGAAACCTTCAAAGACAGTGTCGTGCCCCATGTCAGGACGTCCCTTGAAGATGAGTGATTTGATTACAGTCCGTTTCACACCACTGGACCCCAGTTTGGACAGAGTGGCTCTTCTCACACGTCAAGACAGATATGTGTGTGCAGTAACCAAAGACACACTTGGAAACTCGGTGCCCTGTGCAGTTCTCAGACCCTCtGGAGTCGTAGTCACTATGGAGTGTGTGGAGAAGCTCATAAAGAAAGACATGGTTGATCCAATAACTGGAGACAAACTGAAAGAAAAGGACATCATACCCATTCAGAGGGGTGGGACTGGCTTCGCGGGCTCAGGAGTGGACCTCAAAGCTAAAGAGGCCAGACCCGTAATGCAAGCATAA
>TCONS_00050246
GGAGCAAAGGATCTTTTCCGGTTTACGACCATAGGAGATTAAACATGACACGACATGGCAAGAACTGCACCGCGGGAGCCGTTTACACTTATCACGAGAAGAGGAAAGACACTGCGGCTTCGGGTTATGGGACACAGAGTGTGCGTTTGGGGAAGGATGCAATCAAAGATTTTGACTGCTGCTCTCTGTCCTTGCAGCCCTGCAGAGATCCTGTCCTAACTGAAGATGGATACTTGTATGAAAAAGAGGCCATTCTGCAGTACATCCTTCATCAGAAAACAGAAATTGCCAAGAAAATGAAGGCATATGAAAAGCAAAAACAGGCTCTGAAGAGTGAAGGCCAGCTGGAGTCCAAATCTGAGGAGCGAGAGAGAGCTGAGAAGTTCAAACAGAGAGAGAATAACATCGTCTCAAAACCTATTAACCCCTTTACTTCAGGTAAATCTAAAGATGAAGGAAACCAGAATGGCTCAACCAGCTCCTCCAGTACTGACACGTCATCAGGAGAGTCCAGTTCCTCTTCAGCTCTGCCCAGTTTCTGGATCCCCAGCCTCACACCAGAGGCCAAGCCCACATTGCTAAAGAAACCTTAGCTTATTGTGTCATGCCTGGACTAGGGTAATATGGACTAATCAGGATATATACCCCAACAAAAACATTGGCAAATAGAGCCTAAATGATTCAAAGACAGTGTCGTGCCCCATGTCAGGACGTCCCTTGAAGATGAGTGATTTGATTACAGTCCGTTTCACACCACTGGACCCCAGTTTGGACAGAGTGGCTCTTCTCAC
>TCONS_00050247
ATCTGTGCTTATTACTGCATTTATGAATCTGATACTATTAGCgttatatatattgtgttttggTGTTTGTGTTTTCTGGCTTGTAGCTTAACGTCTATGATGTTCGTTGTATATTTTCTTGTAACTGACGCTAACGTTTGTCCTGCTTGCTAACGAGCTCACTAAACAAATTTTAATCAGTGGGTAGCGCGTTTTGATATTAACAGTATAATAATCTGTGTGCCGACTGTTTACCACCTTTATAAAACAGTGACGTTTCTTTTGTAAAGATTAAACATGACACGACATGGCAAGAACTGCACCGCGGGAGCCGTTTACACTTATCACGAGAAGAGGAAAGACACTGCGGCTTCGGGTTATGGGACACAGAGTGTGCGTTTGGGGAAGGATGCAATCAAAGATTTTGACTGCTGCTCTCTGTCCTTGCAGCCCTGCAGAGATCCTGTCCTAACTGAAGATGGATACTTGTATGAAAAAGAGGCCATTCTGCAGTACATCCTTCATCAGAAAACAGAAATTGCCAAGAAAATGAAGGCATATGAAAAGCAAAAACAGGCTCTGAAGAGTGAAGGCCAGCTGGAGTCCAAATCTGAGGAGCGAGAGAGAGCTGAGAAGTTCAAACAGAGAGAGAATAACATCGTCTCAAAACCTATTAACCCCTTTACTTCAGGTAAATCTAAAGATGAAGGAAACCAGAATGGCTCAACCAGCTCCTCCAGTACTGACACGTCATCAGGAGAGTCCAGTTCCTCTTCAGCTCTGCCCAGTTTCTGGATCCCCAGCCTCACACCAGAGGCCAAGCCCACATTGCTAAAGAAACCTTCAAAGACAGTGTCGTGCCCCATGTCAGGACGTCCCTTGAAGATGAGTGATTTGATTACAGTCCGTTTCACACCACTGGACCCCAGTTTGGACAGAGTGGCTCTTCTCACACGTCAAGACAGATATGTGTGTGCAGTAACCAAAGACACACTTGGAAACTCGGTGCCCTGTGCAGTTCTCAGACCCTCtGGAGTCGTAGTCACTATGGAGTGTGTGGAGAAGCTCATAAAGAAAGACATGGTTGATCCAATAACTGGAGACAAACTGAAAGAAAAGGACATCATACCCATTCAGAGGGGTGGGACTGGCTTCGCGGGCTCAGGAGTGGACCTCAAAGCTAAAGAGGCCAGACCCGTAATGCAAGCATAAATGTGAGGATTGGACAACGCTGTGATGCTGTaaatattatcattcattcattctcctggATTTATTTTAGGTCATTTGTTGTTATTTCTTTAATAAGGGATCATTTTTGAATGGTATTTTTTTCCATGCCTGTAAAGAAGTTATCATGTCATATGTACACATTATgtagttgatttttttttgttcaataaatCTTTCATTTTACACACTTTAAAA
>TCONS_00050248
CATTTATGAATCTGATACTATTAGCgttatatatattgtgttttggTGTTTGTGTTTTCTGGCTTGTAGCTTAACGTCTATGATGTTCGTTGTATATTTTCTTGTAACTGACGCTAACGTTTGTCCTGCTTGCTAACGAGCTCACTAAACAAATTTTAATCAATTAAACATGACACGACATGGCAAGAACTGCACCGCGGGAGCCGTTTACACTTATCACGAGAAGAGGAAAGACACTGCGGCTTCGGGTTATGGGACACAGAGTGTGCGTTTGGGGAAGGATGCAATCAAAGATTTTGACTGCTGCTCTCTGTCCTTGCAGCCCTGCAGAGATCCTGTCCTAACTGAAGATGGATACTTGTATGAAAAAGAGGCCATTCTGCAGTACATCCTTCATCAGAAAACAGAAATTGCCAAGAAAATGAAGGCATATGAAAAGCAAAAACAGGCTCTGAAGAGTGAAGGCCAGCTGGAGTCCAAATCTGAGGAGCGAGAGAGAGCTGAGAAGTTCAAACAGAG
>TCONS_00050249
AGATTAAACATGACACGACATGGCAAGAACTGCACCGCGGGAGCCGTTTACACTTATCACGAGAAGAGGAAAGACACTGCGGCTTCGGGTTATGGGACACAGAGTGTGCGTTTGGGGAAGGATGCAATCAAAGATTTTGACTGCTGCTCTCTGTCCTTGCAGCCCTGCAGAGATCCTGTCCTAACTGAAGATGGATACTTGTATGAAAAAGAGGCCATTCTGCAGTACATCCTTCATCAGAAAACAGAAATTGCCAAGAAAATGAAGGCATATGAAAAGCAAAAACAGGCTCTGAAGAGTGAAGGCCAGCTGGAGTCCAAATCTGAGGAGCGAGAGAGAGCTGAGAAGTTCAAACAGAGAGAGAATAACATCGTCTCAAAACCTATTAACCCCTTTACTTCAGGTAAATCTAAAGATGAAGGAAACCAGAATGGCTCAACCAGCTCCTCCAGTACTGACACGTCATCAGGAGAGTCCAGTTCCTCTTCAGCTCTGCCCAGTTTCTGGATCCCCAGCCTCACACCAGAGGCCAAGCCCACATTGCTAAAGAAACCTTCAAAGACAGTGTCGTGCCCCATGTCAGGACGTCCCTTGAAGATGAGTGATTTGATTACAGTCCGTTTCACACCACTGGACCCCAGTTTGGACAGAGTGGCTCTTCTCACACGTCAAGACAGATATGTGTGTGCAGTAACCAAAGACACACTTGGAAACTCGGTGCCCTGTGCAGTTCTCAGACCCTCGTGAGTTTGAACTTTACACTGTTTATGCAAC
>TCONS_00052721
AGATTAAACATGACACGACATGGCAAGAACTGCACCGCGGGAGCCGTTTACACTTATCACGAGAAGAGGAAAGACACTGCGGCTTCGGGTTATGGGACACAGAGTGTGCGTTTGGGGAAGGATGCAATCAAAGATTTTGACTGCTGCTCTCTGTCCTTGCAGCCCTGCAGAGATCCTGTCCTAACTGAAGATGGATACTTGTATGAAAAAGAGGCCATTCTGCAGTACATCCTTCATCAGAAAACAGAAATTGCCAAGAAAATGAAGGCATATGAAAAGCAAAAACAGGCTCTGAAGAGTGAAGGCCAGCTGGAGTCCAAATCTGAGGAGCGAGAGAGAGCTGAGAAGTTCAAACAGAGAGAGAATAACATCGTCTCAAAACCTATTAACCCCTTTACTTCAGGTAAATCTAAAGATGAAGGAAACCAGAATGGCTCAACCAGCTCCTCCAGTACTGACACGTCATCAGGAGAGTCCAGTTCCTCTTCAGCTCTGCCCAGTTTCTGGATCCCCAGCCTCACACCAGAGGCCAAGCCCACATTGCTAAAGAAACCTTCAAAGACAGTGTCGTGCCCCATGTCAGGACGTCCCTTGAAGATGAGTGATTTGATTACAGTCCGTTTCACACCACTGGACCCCAGTTTGGACAGAGTGGCTCTTCTCACACGTCAAGACAGATATGTGTGTGCAGTAACCAAAGACACACTTGGAAACTCGGTGCCCTGTGCAGTTCTCAGACCCTCGTGAGTTTGAACTTTACACTGTTTATGCAACAATAATCCATGCGcatttaaataacatattttacaCATCTAGTCCTTCCTCTCACTTTTagtttttctgtctttttgtgttttttcaagtGGAGTCGTAGTCACTATGGAGTGTGTGGAGAAGCTCATAAAGAAAGACATGGTTGATCCAATAACTGGAGACAAACTGAAAGAAAAGGACATCATACCCATTCAGAGGGGTGGGACTGGCTTCGCGGGCTCAGGAGTGGACCTCAAAGCTAAAGAGGCCAGACCCGTAATGCAAGCATAAATGTGAGGATTGGACAACGCTGTGATGCTGTaaatattatcattcattcattctcctggATTTATTTTAGGTCATTTGTTGTTATTTCTTTAATAAGGGATCATTTTTGAATGGTATTTTTTTCCATGCCTGTAAAGAAGTTATCATGTCATATGTACACATTATgtagttgatttttttttgttcaataaatCTTTCATTTTACACACTTTAAAA
>TCONS_00050250
ACACCAGAGGCCAAGCCCACATTGCTAAAGAAACCTTCAAAGACAGTGTCGTGCCCCATGTCAGGACGTCCCTTGAAGATGAGTGATTTGATTACAGTCCGTTTCACACCACTGGACCCCAGTTTGGACAGAGTGGCTCTTCTCACACGTCAAGACAGATATGTGTGTGCAGTAACCAAAGACACACTTGGAAACTCGGTGCCCTGTGCAGTTCTCAGACCCTCGTGAGTTTGAACTTTACACTGTTTATGCAACAATAATCCATGCGcatttaaataacatattttacaCATCTAGTCCTTCCTCTCACTTTTagtttttctgtctttttgtgttttttcaagtGGAGTCGTAGTCACTATGGAGTGTGTGGAGAAGCTCATAAAGAAAGACATGGTTGATCCAATAACTGGAGACAAACTGAAAGAAAAGGACATCATACCCATTCAGAGGGGTGGGACTGGCTTCGCGGGCTCAGGAGTGGACCTCAAAGCTAAAGAGGCCAGACCCGTAATGCAAGCATAAATGTGAGGATTGGACAACGCTGTGATGCTGTaaatattatcattcattcattctcctggATTTATTTTAGGTCATTTGTTGTTATTTCTTTAATAAGGGATCATTTTTGAATGGTATTTTTTTCCATGCCTGTAAAGAAGTTATCATGTCATATGTACACATTATgtagttgatttttttttgttcaataaatCTTTCATTTTACACACTTTAAAA

Function

symbol description
nosip Predicted to enable ubiquitin protein ligase activity. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human NOSIP (nitric oxide synthase interacting protein).

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-041114-146 Predicted to enable ubiquitin protein ligase activity. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human NOSIP (nitric oxide synthase interacting protein).

Ensembl:

ensembl_id ENSDARG00000037958

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050245 False 1555 mRNA 0.45 10 32532000 32536162
TCONS_00050246 False 791 nonsense_mediated_decay 0.47 8 32532596 32535126
TCONS_00050247 False 1407 mRNA 0.42 9 32532645 32536378
TCONS_00050248 False 519 mRNA 0.43 5 32532662 32534340
TCONS_00050249 False 774 lncRNA 0.47 7 32532912 32535695
TCONS_00052721 False 1260 lncRNA 0.43 8 32532912 32536378
TCONS_00050250 True 741 lncRNA 0.40 4 32534613 32536378

Neighbor

gene id symbol gene type direction distance location
XLOC_025484 si:ch73-367p23.2 coding upstream 996 32526263 ~ 32531004 (+)
XLOC_025483 trpm4a coding upstream 13053 32492467 ~ 32518947 (+)
XLOC_025482 scaf1 coding upstream 41379 32477782 ~ 32490621 (+)
XLOC_025481 CR936975.1 coding upstream 54715 32474661 ~ 32477285 (+)
XLOC_025480 prr12b coding upstream 70396 32425202 ~ 32461604 (+)
XLOC_025486 pax10 coding downstream 10121 32546499 ~ 32565883 (+)
XLOC_025487 FP236454.1 coding downstream 34931 32571309 ~ 32571371 (+)
XLOC_025488 si:ch73-248e21.1 coding downstream 35551 32571929 ~ 32583374 (+)
XLOC_025489 unc119.2 coding downstream 57979 32594357 ~ 32619634 (+)
XLOC_025490 mmp25a coding downstream 84197 32620575 ~ 32629489 (+)
XLOC_025429 BX649540.1 misc upstream 2282964 30248739 ~ 30249036 (+)
XLOC_025475 NA non-coding upstream 184507 32346134 ~ 32347493 (+)
XLOC_025473 NA non-coding upstream 234997 32293773 ~ 32297003 (+)
XLOC_025458 NA non-coding upstream 612869 31918162 ~ 31919131 (+)
XLOC_025455 BX324157.1 non-coding upstream 743363 31788521 ~ 31788637 (+)
XLOC_025492 NA non-coding downstream 115319 32651697 ~ 32658436 (+)
XLOC_025505 NA non-coding downstream 440504 32976882 ~ 33029027 (+)
XLOC_025506 NA non-coding downstream 504929 33041307 ~ 33043550 (+)
XLOC_025507 NA non-coding downstream 507266 33043644 ~ 33045022 (+)

Expression


Co-expression Network