XLOC_025490 (mmp25a)


Basic Information

Item Value
gene id XLOC_025490
gene name mmp25a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32620575 ~ 32629489 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050259
TTGTTTGTCACACTGATGACCACTGCTCTCACAGTGACCAGCGCCGCGCTTCTCTGTGTTGTGTGCGCGCGACCCGCGTTGATGCCTGACCAGTATGCTCGAGGAGTGgaCTGGCTGATTCGGTATGGGTATTTACAGTCTCCAGATACTCTGATTGGTGGTCTTCAGACCAAGGAGAGTATTGAAGAAGCTGTCCGCAAAATGCAACGATTTGCTGGCATCGAAGAGACTGGGAACTTGGATCAGAAGACTTTAGAAATGATGGGCAGACCTCGTTGCTCTCTCCCAGACACCATCAGCTTTGAAGAGCTGCTGAAAAGAAACAGGAGAGGTAAAAACAAGgtgatgatgaagaagaagagaTACACTCTGCCAAAGATGAGATGGGACAAGACTGATATAACATGGAGCATGCAAGATTTTCCACCTCCCTCAGTGTCTCCTGCTCTAAATCCAGGTCTGGTGAGGCTTATTTTGGGCAATGCCCTGCGAGTGTGGAGTGAAAACACACCTCTGCGTTTCCACTACTCTCCAGATGAACCATCGCCACAGACAGACATCACAGTCACTTTTACCAGTGGCTACCATGAGGACGGCTATCCATTCGATGGCAAGGGTGGAGCTCTGGCACATGCCTTCTTCCCAGGTAAAGGAGATCTGGCTGGAGACACACACTTTGATGCTGAAGAGAGCTGGTCGTATGGAGACTGGAGCAGCGACTCAGATTTATTCACAGTCGCAGTGCATGACTTTGGTCACGCTTTAGGCCTGTTTCACTCCTCCTCCAGTGACTCCATCATGAAGCCGTATTACTTTGGTCCTGTGGGAGAGATGAACAGCTACAGCTTAACCGCTGTTGACAGACTGGGAATTCAGGCGCTGTATGGAAAACAACACAATTTGAAACCACCTCCATCTGTTGCTGCTCCCACTACTTATCCGACCCAGTTTTCCACCACTTATCTTCTACATCCTCCCTATTAtCCACCAGACTCTGCTGATCGCTGTCAGGGAGGTTATGATGCCGTTGCTAATATCAGAGCAGAGATTTTTTTCTTTAGAGGTCAACATTTTTGGAGGGTAGATCATTCAGGCTCATTGCTGTCCTCGACTCCAGCTCTGATCCACAGCTTCTGGATTGGTTTGCCTCCAGATACAGCCAGGGTTGATGCAGCATATGAGAGAAGAGATGGACATATTGTATTCTTTATTGGTAATCAGTACTGGGTTTTTAGGAACACAATGGCCCTGCCTGGGTATCCACGACGGCTTTCAGACTGGGGTTTACACACTGCAGCAGGACAGCTTGCTGAAAGTGTGGAGGCAGTGTTTGTGTGGCCACACAATGGGAAGACGTATGTGTTCAGCAGTGGACTGTACTGGAGGTTTGATGAGGCAGGAGGAGAGAGGAAGATGGAGGAAGGCTATCCCAAGCCAGCCGCCATCTGGGGGATGCCCTCTCACCCAGATGATATCATCGCATTTCTAGATGGAGAAACCTACTTTTTCAAAGACTCAAACTACTGGATTTTACAAAGAGGAGGTCTGGATCTGGAATCTGCTTCTCCGAAGTCTATAGCTACTGACTGGATGAAATGTGATAGACATGTTTCAGCTCCCACACCTGAGATTCCCAGAGACAGAAACTGTAGTTGTGTCCAGAATGTGGCAGCCGTGATGCGATCTTTATCAGGTTTCTACAAACAGCCATTAAGCAGCACATCTGTTCAGCATTga

Function

symbol description
mmp25a Predicted to enable metalloendopeptidase activity. Predicted to be involved in collagen catabolic process and extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular matrix. Orthologous to human MMP25 (matrix metallopeptidase 25).

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0006508 proteolysis biological_process
GO:0030574 collagen catabolic process biological_process
GO:0031012 extracellular matrix cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070820-22 Predicted to enable metalloendopeptidase activity. Predicted to be involved in collagen catabolic process and extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular matrix. Orthologous to human MMP25 (matrix metallopeptidase 25).

Ensembl:

ensembl_id ENSDARG00000077290

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050259 True 1737 mRNA 0.48 11 32620575 32629489

Neighbor

gene id symbol gene type direction distance location
XLOC_025489 unc119.2 coding upstream 941 32594357 ~ 32619634 (+)
XLOC_025488 si:ch73-248e21.1 coding upstream 37201 32571929 ~ 32583374 (+)
XLOC_025487 FP236454.1 coding upstream 49204 32571309 ~ 32571371 (+)
XLOC_025486 pax10 coding upstream 54692 32546499 ~ 32565883 (+)
XLOC_025485 nosip coding upstream 84197 32532000 ~ 32536378 (+)
XLOC_025491 srrm2 coding downstream 1883 32631372 ~ 32650278 (+)
XLOC_025492 NA coding downstream 22208 32651697 ~ 32658436 (+)
XLOC_025493 si:dkey-16l2.16 coding downstream 32276 32661765 ~ 32669219 (+)
XLOC_025494 rnf25 coding downstream 41657 32671146 ~ 32680126 (+)
XLOC_025495 kat8 coding downstream 51785 32681274 ~ 32689328 (+)
XLOC_025429 BX649540.1 misc upstream 2371539 30248739 ~ 30249036 (+)
XLOC_025481 CR936975.1 non-coding upstream 143290 32474661 ~ 32477285 (+)
XLOC_025475 NA non-coding upstream 273082 32346134 ~ 32347493 (+)
XLOC_025473 NA non-coding upstream 323572 32293773 ~ 32297003 (+)
XLOC_025458 NA non-coding upstream 701444 31918162 ~ 31919131 (+)
XLOC_025505 NA non-coding downstream 347393 32976882 ~ 33029027 (+)
XLOC_025506 NA non-coding downstream 411818 33041307 ~ 33043550 (+)
XLOC_025507 NA non-coding downstream 414155 33043644 ~ 33045022 (+)
XLOC_025508 CR392003.1 non-coding downstream 416394 33045883 ~ 33048390 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_03995177_04005602 NA coding CI01000069 null 3995109 ~ 4005602 (+)