G632340 (parp3)


Basic Information

Item Value
gene id G632340
gene name parp3
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 61488767 ~ 61492131 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU718849
ATTGCCAAAACCTACTTTAGAATCTGTGGTCCTACTGAGACCCAGCCACCACTTTACCTTGACCTCTGCATCCTGGTCTCCATCCACCTCTATCAGGGTGTACTTCCCCGGGTGAGACACAAAGTTGTCCCGCTCCTTCCAGCTGTTTTTCGTCTTGTCTTTGAACTTCTTCTCAAAGTCTTTGATGGCTTTGTCTGGGCTGTTGGAGAGGTCTGATAGGTTTGACTGGCCTGTTTCCCCCACTCTTCCCCATCTGTTCCAGCAGTAGTAAGAGTCATCTATACACAACACTTGAATGACATAAAACTTGTTGTTGTTATTTCCAATGTTGGTCTGATTCAGCATGCAATCATAATCTTCATACACCCTTCCTGAATGCTGTTCTGACAGCAAGCAGTGCTCATCAGCCTTCCTTTTGCCCTTCActtctggccctgcagccttcaGAGCCTCTTTGGCAGAGGTAAATGCATCCTTTGGTGTGTCAGGCTCTTGCTTGACCTTCTTTCCACCCACTTTATTGGCTTTGGTGGATGAGGCAGCCCTTCTCTTTGGTGCCATCCCTTATCTGTATTTAAA

Function

symbol description
parp3 Predicted to enable NAD+ ADP-ribosyltransferase activity and protein ADP-ribosylase activity. Acts upstream of or within ectodermal placode development and regulation of neural crest formation. Predicted to be located in nucleus. Predicted to be active in nucleolus and site of double-strand break. Is expressed in axis and notochord. Orthologous to human PARP3 (poly(ADP-ribose) polymerase family member 3).

NR:

description
poly [ADP-ribose] polymerase 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU718849 True 579 lncRNA 0.47 3 61488767 61492131

Neighbor

gene id symbol gene type direction distance location
gpx1 gpx1 coding downstream 251772 61218553 ~ 61237064 (-)
LOC110528157 brk1 coding downstream 301917 61181265 ~ 61186850 (-)
LOC110528156 NA coding downstream 324102 61158940 ~ 61164665 (-)
LOC118965385 NA coding downstream 329906 61156718 ~ 61158861 (-)
LOC110528155 LOC106583192 coding downstream 360250 61055389 ~ 61128517 (-)
LOC110528164 LOC106583182 coding upstream 49872 61542003 ~ 61557188 (-)
LOC110528165 LOC106583181 coding upstream 142066 61634197 ~ 61749981 (-)
LOC110528991 LOC106583180 coding upstream 308547 61800678 ~ 61921139 (-)
LOC110528169 LOC106583177 coding upstream 667844 62159975 ~ 62175491 (-)
LOC110528170 LOC106565587 coding upstream 683850 62175981 ~ 62185946 (-)
G631978 LOC106583186 non-coding downstream 36135 61451587 ~ 61452632 (-)
G631868 NA non-coding downstream 105373 61383073 ~ 61383394 (-)
G631867 NA non-coding downstream 106662 61381892 ~ 61382105 (-)
G631866 NA non-coding downstream 107098 61381370 ~ 61381669 (-)
G631864 NA non-coding downstream 109375 61379088 ~ 61379392 (-)
G632356 NA non-coding upstream 35625 61527756 ~ 61528029 (-)
G632423 NA non-coding upstream 131906 61624037 ~ 61624341 (-)
G632427 NA non-coding upstream 140549 61632680 ~ 61633563 (-)
G632450 NA non-coding upstream 166293 61658424 ~ 61658686 (-)
G631687 emc3 other downstream 289329 61198007 ~ 61199438 (-)
G631740 NA other downstream 297722 61190708 ~ 61191045 (-)
LOC110528989 LOC106583145 other downstream 740668 60699279 ~ 60822525 (-)
G630747 NA other downstream 1404910 60083046 ~ 60083857 (-)
G630227 NA other downstream 1571216 59915979 ~ 59917551 (-)
G632459 NA other upstream 199117 61691248 ~ 61691644 (-)
G632994 LOC106583176 other upstream 729141 62221272 ~ 62222445 (-)
LOC118965309 LOC106583169 other upstream 1016088 62506239 ~ 62520518 (-)
si:dkey-28n18.9 LOC106583160 other upstream 1514644 62983119 ~ 63008072 (-)
LOC110528212 LOC106583293 other upstream 2293641 63785772 ~ 63827547 (-)

Expression


Co-expression Network