XLOC_025495 (kat8)


Basic Information

Item Value
gene id XLOC_025495
gene name kat8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32681274 ~ 32689328 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050270
AACGCGGTGCGCAATGTGTTTTCAAATGGACAAAGATGTCTGGCGCAGCTATGTCAATGTCCAACAGTCGACACCCGAACATGAACAATTCATATGAGAACTGCGGTTCAGAAGAGCGAATGGATGTTGAAATAGACTCTGGTCACGCTGGAACGGACCGAGGAAGATTGGAAACGGGAACTCGAGCAACATGTTCATCAAATGGCAGCGGCGGGGAAGAGGATGAGATGGAGGCCGCGGATCGAGAACGAGAAGCCACGGGCTCGAGTACTCCGCGCTCCGCTGACGGAGTGTCGCTTGGCGGCGGCAGAGAGCAGGAGGTGTCGGTAGAGATTGGGGAGACTTATCTGTGTCAGCGCACGGACAAAACATGGCATTCAGCAGAGGTTATTCAGTCCAGACTGAATGAGCAGGAGGGCAGAGAAGAGTTTTATGTCCACTATGTTGGATTCAATAGACGTTTAGATGAGTGGGTTGGAAAGGCTCGTTTGGCGTTGACAAAGACTGTGAAAGATGCTGTGAGGAAGAGTGTGGAGGAAGGGGGTGGAGGAGAACTTGTGGACCAGCCAGAGAGGAAGATAACACGAAATCAGAAGAGGAAACATGATGAGATCAACCACGTTCAGAAGactTATGCAGAGATGGACCCCACTACAGCAGCCTTGGAGAAAGAGCATGAGGCGatcacaaaagtaaaatatgtggACAAAATCCAAATTGGGAACTTTGAGATTGATGCGTGGTACTTTTCTCCATTCCCGGAGGACTATGGAAAACAGCCCAAGCTTTGGATCTGTGAATACTGCCTGAAGTATATGAAGTATGAGAAGACCTTCAGATACCATCTGTCACAGTGTCAGTGGCGCCAGCCTCCAGGCAAAGAGATTTATCGCAAAAATAATATCTCTGTATATGAGGTTGATGGGAAGGACCATAAGATCTACTGTCAGAATCTGTGCCTCCTGGCAAAGCTGTTTCTGGATCACAAAACACTTTACTTTGATGTTGAACCATTCATCTTCTACATCCTCACTGAAGTCAACAAACAGGGAGCGCATATTGTGGGTTACTTCTCCAAGGAAAAAGAGTCTCCTGATGGGAACAATGTTGCTTGTATTCTCACCCTTCCTCCATATCAACGACGAGGATATGGAAAATTTCTAATTGCATTCAGTTATGAGTTATCTAAGCTGGAAAGCACAGTGGGCTCTCCAGAGAAGCCTCTGTCAGACTTGGGAAAGTTGAGTTATAGGAGTTACTGGTCATGGGTACTACTAGAGATTTTGCGGGACTTCAGAGGGACACTTTCCATCAAAGATCTCAGTCAGATGACGAGCATCACTCAGAGTGACATCATCAGCACACTACAGTCTCTGAACATGGTCAAGTACTGGAAAGGTCAGCATGTCATCTGTGTCACTCCCAAACTCGTAGAGGAACATCTGAAAAGTGCCCAGTATAAGAAACCTCCAATAACAGTGGACACACATTGTTTGAAATGGGCACCTCCAAAACACAAGCAGGCCAAGTTCTCCAAAAAATGAGGAGTATGAACGGTAAAGAGGAGAGTACGACTGCCACTTCACCCCTGATGTTTTTCACACCTAAATGTCATGTAGAAATACTTTCTCCAAGAGGAAAATGTCTACGATTGTACATTCGCATTGTATTGagtctgttatttttttataaataaatgaatagtaatATTCA
>TCONS_00050271
ATGTCTGGCGCAGCTATGTCAATGTCCAACAGTCGACACCCGAACATGAACAATTCATATGAGAACTGCGGTTCAGAAGAGCGAATGGATGTTGAAATAGACTCTGGTCACGCTGGAACGGACCGAGGAAGATTGGAAACGGGAACTCGAGCAACATGTTCATCAAATGGCAGCGGCGGGGAAGAGGATGAGATGGAGGCCGCGGATCGAGAACGAGAAGCCACGGGCTCGAGTACTCCGCGCTCCGCTGACGGAGTGTCGCTTGGCGGCGGCAGAGAGCAGGAGGTGTCGGTAGAGATTGGGGAGACTTATCTGTGTCAGCGCACGGACAAAACATGGCATTCAGCAGAGGTTATTCAGTCCAGACTGAATGAGCAGGAGGGCAGAGAAGAGTTTTATGTCCACTATGTTGGATTCAATAGACGTTTAGATGAGTGGGTTGGAAAGGCTCGTTTGGCGTTGACAAAGACTGTGAAAGATGCTGTGAGGAAGAGTGTGGAGGAAGGGGGTGGAGGAGAACTTGTGGACCAGCCAGAGAGGAAGATAACACGAAATCAGAAGAGGAAACATGATGAGATCAACCACGTTCAGAAGactTATGCAGAGATGGACCCCACTACAGCAGCCTTGGAGAAAGAGCATGAGGCGatcacaaaagtaaaatatgtggACAAAATCCAAATTGGGAACTTTGAGATTGATGCGTGGTACTTTTCTCCATTCCCGGAGGACTATGGAAAACAGCCCAAGCTTTGGATCTGTGAATACTGCCTGAAGTATATGAAGTATGAGAAGACCTTCAGATACCATCTGTCACAGTGTCAGTGGCGCCAGCCTCCAGGCAAAGAGATTTATCGCAAAAATAATATCTCTGTATATGAGGTTGATGGGAAGGACCATAAGATCTACTGTCAGAATCTGTGCCTCCTGGCAAAGCTGTTTCTGGATCACAAAACACTTTACTTTGATGTTGAACCATTCATCTTCTACATCCTCACTGAAGTCAACAAACAGGGAGCGCATATTGTGGGTTACTTCTCCAAGGAAAAAGAGTCTCCTGATGGGAACAATGTTGCTTGTATTCTCACCCTTCCTCCATATCAACGACGAGGATATGGAAAATTTCTAATTGCATTCAGTTATGAGTTATCTAAGCTGGAAAGCACAGTGGGCTCTCCAGAGAAGCCTCTGTCAGACTTGGGAAAGTTGAGTTATAGGAGTTACTGGTCATGGGTACTACTAGAGATTTTGCGGGACTTCAGAGGGACACTTTCCATCAAAGATCTCAGTCAGATGACGAGCATCACTCAGAGTGACATCATCAGCACACTACAGTCTCTGAACATGGTCAAGTACTGGAAAGGTCAGCATGTCATCTGTGTCACTCCCAAACTCGTAGAGGAACATCTGAAAAGTGCCCAGTATAAGAAACCTCCAATAACAGGTAACATcagaaaaacaaatgctgaactGGGCAGCCTTCTTCTTTTTTCTCCAAAGTTTAATCGTTTAACTTTCTGTGCTTCTACAGTGGACACACATTGTTTGAAATGGGCACCTCCAAAACACAAGCAGGCCAAGTTCTCCAAAAAATGAGGAGTATGAACGGTAAAGAGGAGAGTACGACTGCCACTTCACCCCTGATGTTTTTCACACCTAAATGTCATGTAGAAATACTTTCTCCAAGAGGAAAATGTCTACGATTGTACATTCGCATTGTATTGagtctgttatttttttataaataaatgaatagtaatATTCACATCATTGTTCATCATCTTTGTTTTATCATTGTGGTACTTTAGTTTATCTTTGTTTTGTAAAGGCCATTTCACACTGCACAGACCAATGGCAACAAACAAGTCTGTCAGATTTTGCTGGATCAGACTGTAATTATTTTCATTTGGTCAGCTGTTGGTCAGTTTATTTTCACCAATGGTGGAATGTCTGAGCAGTGTGATTATGATTTTCCAACAAACTGACGTAGaactttacataaaattactatTTAGCCATAGGAAGTGTTAATTAATTACTGTGTTTATTGTGTGTGGCGATTGTGAACTATTTTTTCAGCGACATTCTACATCCAATGGGCCACTTGTTTGTTGGTGTTGGCATTTGTCTGAGCAATTTAAATTGGCCTCAGGGTAGTTTAATATTTAGACCAAACCTTCCATCTTGTCCATGTGAcaatgttaaaaagaaaaagttgCAAGTCAAGAAACATTTTGCTGAATTATTCATTAGGCAGTACAGGATTACCTATTGCACATGCAGCACCTGTCTGGCTTTTAGCTGAAAGCTGATCCCTATATACACTAGTGAGAATATATACATAAGATTAAGAGGGTCAAATGGAAAAAGAATGGCCCTTCAGCTTAAGCAACAATAACTTGGTAACTAATACTGTGGAACTGAGAAGAACTAAGAGGGGTTTTAAGTATTTTAGAGCAATAGTTTTAATGCAAATATGACATTTAAAACATAGGTGCTTT
>TCONS_00050272
GGAAAATTTCTAATTGCATTCAGTTATGAGTTATCTAAGCTGGAAAGCACAGTGGGCTCTCCAGAGAAGCCTCTGTCAGACTTGGGAAAGTTGAGTTATAGGAGTTACTGGTCATGGGTACTACTAGAGATTTTGCGGGACTTCAGAGGGACACTTTCCATCAAAGATCTCAGGTACACATCCAGTCTGAATTTACAAGCACAAGGTCACATGTGCTCAAGTATAATTGGATAcctcataggtctcaaactcaattcctggaggactGCAGATTTTCTCCAACCCTGGTCAAATAGAGCTGATTCAACTAATGAAcgtgttcatgactcttttgaacaccttcattatttggatcagctgtttgataggattggagcaaaactgtgcagagcatcggccctccagaaacaggGTATATGCGGAGCTAGTGTTTCTTACCATATTAATAAACTTTCcgtgaaaggttaatgtgactttttttttccattttatacggttccttttacagtattgaagttgtaatgtaattacaatacattcagttaaatagactttgacattcatttagttgctcaggtgtaaaacaaga

Function

symbol description
kat8 Predicted to enable histone acetyltransferase activity (H4-K16 specific); histone binding activity; and transcription coregulator activity. Acts upstream of or within primitive hemopoiesis. Predicted to be located in nucleus. Predicted to be part of MSL complex. Orthologous to human KAT8 (lysine acetyltransferase 8).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0016573 histone acetylation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0072487 MSL complex cellular_component
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0046972 histone acetyltransferase activity (H4-K16 specific) molecular_function
GO:0004402 histone acetyltransferase activity molecular_function

KEGG:

id description
ko03000 Transcription factors
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-7510 Predicted to enable histone acetyltransferase activity (H4-K16 specific); histone binding activity; and transcription coregulator activity. Acts upstream of or within primitive hemopoiesis. Predicted to be located in nucleus. Predicted to be part of MSL complex. Orthologous to human KAT8 (lysine acetyltransferase 8).

Ensembl:

ensembl_id ENSDARG00000027187

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050270 False 1713 mRNA 0.45 11 32681274 32688592
TCONS_00050271 False 2501 mRNA 0.42 10 32681309 32689328
TCONS_00050272 True 589 lncRNA 0.39 2 32685986 32686666

Neighbor

gene id symbol gene type direction distance location
XLOC_025494 rnf25 coding upstream 1148 32671146 ~ 32680126 (+)
XLOC_025493 si:dkey-16l2.16 coding upstream 12055 32661765 ~ 32669219 (+)
XLOC_025492 NA coding upstream 22838 32651697 ~ 32658436 (+)
XLOC_025491 srrm2 coding upstream 30996 32631372 ~ 32650278 (+)
XLOC_025490 mmp25a coding upstream 51785 32620575 ~ 32629489 (+)
XLOC_025496 si:dkey-16l2.17 coding downstream 379 32689707 ~ 32696592 (+)
XLOC_025497 fus coding downstream 9096 32698424 ~ 32711280 (+)
XLOC_025498 setd1a coding downstream 24829 32714157 ~ 32742578 (+)
XLOC_025499 hsd3b7 coding downstream 54618 32743946 ~ 32778250 (+)
XLOC_025500 tbc1d10b coding downstream 100277 32789605 ~ 32811362 (+)
XLOC_025429 BX649540.1 misc upstream 2432238 30248739 ~ 30249036 (+)
XLOC_025487 FP236454.1 non-coding upstream 109903 32571309 ~ 32571371 (+)
XLOC_025481 CR936975.1 non-coding upstream 203989 32474661 ~ 32477285 (+)
XLOC_025475 NA non-coding upstream 333781 32346134 ~ 32347493 (+)
XLOC_025473 NA non-coding upstream 384271 32293773 ~ 32297003 (+)
XLOC_025505 NA non-coding downstream 287554 32976882 ~ 33029027 (+)
XLOC_025506 NA non-coding downstream 351979 33041307 ~ 33043550 (+)
XLOC_025507 NA non-coding downstream 354316 33043644 ~ 33045022 (+)
XLOC_025508 CR392003.1 non-coding downstream 356555 33045883 ~ 33048390 (+)
XLOC_025509 NA non-coding downstream 504040 33193368 ~ 33194715 (+)

Expression


Co-expression Network