G632992 (LOC106565589)


Basic Information

Item Value
gene id G632992
gene name LOC106565589
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62218495 ~ 62219506 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU719558
GCCATTCACAGAGAAGGAAAGAGGCTATGCTCCTTGTTCCCCTCAGATCTCATAATCTCACGGTCATTAGGTCAGTCACACTGTgctgacggagggagggagaggacaatgaaGAGGGAGGACGAAAAAGGGAGGGAaagttagagaggaggagagggtagtgaTTTAGAGATGAAGAGTGCCCTCCACAGCCACAGTGCTCCTGGGTCCTTCCAAGCGCGATACTGATCATCACCGGGG
>TU719561
CAGCGGGGTCTGGAAGTAAGGGGCAGGCGATGGGTTCCAGGTGGGTGGCACCAGGGGGTAGAGTGGGTACTGCTGCTGGGGGCTGAACACCTGCTGCATGTAGAGGTGTGTTGAGTTATACTGGGACTGGCCCTGCTGGCTGTACACACTGGAGTTCGGTACACTACGGTAGCCATTCTTCGCAAAGAATGTGTTGATGGCCTTGATACGAGCCTagacagagcaagagagtgaCAGGAAGATGTGTAAAGGACTGGAAATGGAGAGtatgaacacaacatgtaaaCACAATGTACAG
>TU719562
gtcctatacatactatattaactacaacctaaaacctcttaccttggaatattaaagtctcgtgttaaaaggaaccaccagctttcatatgttctcatgttctgagcaaggaacttaagttagcttttttttttacatggcacatattgcacttttactttcttcaacactttgtttttgcattatctaaaccaaattgaacatatttCATTGATTATTTGAGGccaaattgatttttattgatgtattatattaagttaaaataagtgtttattcagtattgttgtaagtgtcattattacaaataaataaaaaacatttatatACATAAATCGGACAATaaatttttttggtcctccaataatcggtatcggtattgaaaaatcataatggtcgacctctagttacaACAGAAACAACAATCAAGCGGGCCTCACCAGCGGGGTCTGGAAGTAAGGGGCAGGCGATGGGTTCCAGGTGGGTGGCACCAGGGGGTAGAGTGGGTACTGCTGCTGGGGGCTGAACACCTGCTGCATGTAGAGGTGTGTTGAGTTATACTGGGACTGGCCCTGCTGGCTGTACACACTGGAGTTCGGTACACTACGGTAGCCATTCTTCGCAAAGAATGTGTTGATGGCCTTGATACGAGCCTagacagagcaagagagtgaCAGGAAGATGTGTAAAGGACTGGAAATGGAGAGtatgaacacaacatgtaaaCACAATGTACAG
>TU719559
CAGCGGGGTCTGGAAGTAAGGGGCAGGCGATGGGTTCCAGGTGGGTGGCACCAGGGGGTAGAGTGGGTACTGCTGCTGGGGGCTGAACACCTGCTGCATGTAGAGGTGTGTTGAGTTATACTGGGACTGGCCCTGCTGGCTGTACACACTGGAGTTCGGTACACTACGGTAGCCATTCTTCGCAAAGAATGTGTTGATGGCCTTGATACGA

Function

NR:

description
PREDICTED: la-related protein 4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU719558 False 240 lncRNA 0.53 1 62218495 62218734
TU719561 False 298 lncRNA 0.53 1 62218772 62219069
TU719562 False 735 lncRNA 0.39 1 62218772 62219506
TU719559 True 211 lncRNA 0.57 1 62218859 62219069

Neighbor

gene id symbol gene type direction distance location
LOC110528170 LOC106565587 coding downstream 32549 62175981 ~ 62185946 (-)
LOC110528169 LOC106583177 coding downstream 43004 62159975 ~ 62175491 (-)
LOC110528991 LOC106583180 coding downstream 297356 61800678 ~ 61921139 (-)
LOC110528165 LOC106583181 coding downstream 468514 61634197 ~ 61749981 (-)
LOC110528164 LOC106583182 coding downstream 661307 61542003 ~ 61557188 (-)
LOC110527134 LOC106583149 coding upstream 125576 62345082 ~ 62347315 (-)
LOC110528993 NA coding upstream 129596 62349102 ~ 62349904 (-)
LOC118965309 LOC106583169 coding upstream 286733 62506239 ~ 62520518 (-)
slc4a8 LOC106583168 coding upstream 318827 62538333 ~ 62589748 (-)
LOC118965401 NA coding upstream 325478 62544984 ~ 62545127 (-)
G632991 NA non-coding downstream 492 62217781 ~ 62218003 (-)
G632963 NA non-coding downstream 36196 62182100 ~ 62182299 (-)
G632961 NA non-coding downstream 39921 62178268 ~ 62178574 (-)
G632960 NA non-coding downstream 41318 62176921 ~ 62177177 (-)
G632936 NA non-coding downstream 51552 62140952 ~ 62166943 (-)
G632993 NA non-coding upstream 795 62220301 ~ 62221099 (-)
G632994 LOC106583176 non-coding upstream 1943 62221272 ~ 62222445 (-)
G632995 NA non-coding upstream 2995 62222501 ~ 62222705 (-)
G632997 NA non-coding upstream 3328 62222834 ~ 62223129 (-)
G632996 LOC106583176 non-coding upstream 3713 62223219 ~ 62228447 (-)
G632459 NA other downstream 526851 61691248 ~ 61691644 (-)
G631687 emc3 other downstream 1019057 61198007 ~ 61199438 (-)
G631740 NA other downstream 1027450 61190708 ~ 61191045 (-)
LOC110528989 LOC106583145 other downstream 1470396 60699279 ~ 60822525 (-)
G630747 NA other downstream 2134638 60083046 ~ 60083857 (-)
si:dkey-28n18.9 LOC106583160 other upstream 787269 62983119 ~ 63008072 (-)
LOC110528212 LOC106583293 other upstream 1566266 63785772 ~ 63827547 (-)
LOC110528216 LOC106565449 other upstream 1775010 63993536 ~ 64036771 (-)

Expression


Co-expression Network