G633006 (atf7)


Basic Information

Item Value
gene id G633006
gene name atf7
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62237766 ~ 62263594 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU719591
tgatttcttttgattttcccaaaatgtcaagcaaagaggcactgagtttgaaggtaggccttgaaatacatccacgggtacacctccaattgactcaaatgatgtcaattagcctatcagaagcttctaaagccattacataattttctgaaattttccaagctgtttaaaggcacagtcaacttagtgtgtgaacttttgacccactggaaatgtgatacagtgaattataaatgaaataatctgtctgtaaaaaaattgttggaaaaatgacttgtgtcatgcaaagtagatgtcctaactgactttccaaaactatagtttgttaacaagaaatgttgGGAGTGGTTGAGAAACAAGTTAGTGACTactacctaagtgtatgtaaacttccgacttcaactgtagacagTGACAGTGCATCCAAGCTAGGATCAATCAGAAAATGGGCCCAAGAGGCAGGACTACTCAGTCTGTTCAGTGATTATCATTGGCTGTGAGGCTATCAAGTGTGTCCAAGGTCATAGAGCGTAGGATGGAGAAAGATGGGGAGGGGAGTGAGAAGTACTATCAACAGGTGGAATTTCAGATTTCAAATCaggtccctttctctctttcaatctcttgcACACATCATTGTGCCAGTCCAGCCTCGTAAAGCCCAATGTAGAGTTCTTACTGGCTCCCTGCGCCTGCTCATCATCTGGGGGCCGGCTGCGGCTGTGTGGCCATGAGGACCCCTCCCTGCTGGGCCGCCCCCATGCCGGCCAGGACCGACATGGCTACTGCCTCAGCCGCGCGGACGCTCAGCCCGTTGACGGTGATGGCCCCAGGGCTGGGGGCAAGGGGCGAAGGCCCGTGCTGGATAACCGGGGCTGGGGAACCCATAGGCTCAGAGGGGGGGTCCCTGGAGTTCTCCTCTACTCCTgc

Function

symbol description
atf7 Enables several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; mitogen-activated protein kinase binding activity; and transcription coactivator binding activity. Involved in negative regulation of transcription by RNA polymerase II and positive regulation of transcription by RNA polymerase II. Located in nucleoplasm. Biomarker of colorectal cancer.

NR:

description
cyclic AMP-dependent transcription factor ATF-7-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU719591 True 930 lncRNA 0.48 2 62237766 62263594

Neighbor

gene id symbol gene type direction distance location
LOC110528170 LOC106565587 coding downstream 51820 62175981 ~ 62185946 (-)
LOC110528169 LOC106583177 coding downstream 62275 62159975 ~ 62175491 (-)
LOC110528991 LOC106583180 coding downstream 316627 61800678 ~ 61921139 (-)
LOC110528165 LOC106583181 coding downstream 487785 61634197 ~ 61749981 (-)
LOC110528164 LOC106583182 coding downstream 680578 61542003 ~ 61557188 (-)
LOC110527134 LOC106583149 coding upstream 81488 62345082 ~ 62347315 (-)
LOC110528993 NA coding upstream 85508 62349102 ~ 62349904 (-)
LOC118965309 LOC106583169 coding upstream 242645 62506239 ~ 62520518 (-)
slc4a8 LOC106583168 coding upstream 274739 62538333 ~ 62589748 (-)
LOC118965401 NA coding upstream 281390 62544984 ~ 62545127 (-)
G632996 LOC106583176 non-coding downstream 9319 62223219 ~ 62228447 (-)
G632997 NA non-coding downstream 14637 62222834 ~ 62223129 (-)
G632995 NA non-coding downstream 15061 62222501 ~ 62222705 (-)
G632994 LOC106583176 non-coding downstream 15321 62221272 ~ 62222445 (-)
G632993 NA non-coding downstream 16667 62220301 ~ 62221099 (-)
G633054 LOC106583173 non-coding upstream 40649 62304243 ~ 62304693 (-)
G633347 NA non-coding upstream 235896 62499490 ~ 62501459 (-)
G633346 NA non-coding upstream 239761 62503355 ~ 62504805 (-)
G633425 NA non-coding upstream 343518 62607112 ~ 62607360 (-)
G632459 NA other downstream 546122 61691248 ~ 61691644 (-)
G631687 emc3 other downstream 1038328 61198007 ~ 61199438 (-)
G631740 NA other downstream 1046721 61190708 ~ 61191045 (-)
LOC110528989 LOC106583145 other downstream 1489667 60699279 ~ 60822525 (-)
si:dkey-28n18.9 LOC106583160 other upstream 743181 62983119 ~ 63008072 (-)
LOC110528212 LOC106583293 other upstream 1522178 63785772 ~ 63827547 (-)
LOC110528216 LOC106565449 other upstream 1730922 63993536 ~ 64036771 (-)
G635167 NA other upstream 1768852 64032446 ~ 64035381 (-)

Expression


Co-expression Network