G633715


Basic Information

Item Value
gene id G633715
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62840892 ~ 62881773 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU720393
TGTCGTCATTCTTGGAATTTATTTCCAAAGCAGACAAAGTCTTTTTTTTTAGATCCATCATCACTTTATCCAGGGATAGGTTGGAAAGGAAATTACAACAATGtttagaaaaaaatatgaaacatttttaaaaaaggtacTAGAGCCTacattaacataatcactagGGACACTCGAGTGCTATGGAAAAAGACTACAGAACTATGGCACAACACCATTTCATAATGATGCACAATTTGTTGAAACTGTTGGTTAACTACATTATTGGTATAAATCTTATATGACAAAAGATGACTGAAAAAATGTGACAGCATTAAGTTAAAACACCACACCTGTTGATTGAATGAATTTCCCTCATCATAAACTTTTCTAATAAGCTACTGGAGGGAAAAAGACAAACTTCAACAGTTGGTTTTGTAATCACATGATATGCCCTCAACTATTTCATCAGCTGTGGCGAGGGGTACGAGACATTTTCCACATGGACATGTACCCACACACTCGTGCCCTTTTCTGCGACATTTCACTCCAATAAACATTTTATCGGCATCACAAGTAGTAAGGCTTTTGATCACAATCTCCATGTCAAAATGTAGGGCCTGACCTTCAGGCAGGTGGAATGCCAGGGTCACATGGTCCCACATGTACCATGCATTCCCCCCGCCTTCTGTTCCTACATTTTGGTTAACTTCATCTATGGCTAACCCAAAGGCATGGGTTTCAGACATGGCTTGTGCACGCCAGACAATGTTGCCACTCATgtaagcacagagagcatcatcactaccatcaccaagAACAGGGTACTTCTCAAATTCCTTATCATCTGGACTGTGAACAAGCACTGTGTACATGATCTCTTGTTTGTAGACTACAGTCTCATACACTCTCAGGACAGGCTGTTTTCCACCACAGATCTGCTGACTGTACATCATCAGGAAATTAGACAGACTGAAAGTGAACCTGAAGTTCCCAAAGCGTGATGCCTTCCTGAAGGCAGGTGAGGTGGTGAACTTGCTGAGGAAGGGTTGCTGTATCTGCCTCTGCTCAGGTGTTCTGTCAGGGAAGATCTTCTCCAGGAAACTCTTCTCACCCCCCTTAAATCCACCTGATTTCAAGATTCCATCAAGGCCTCTTTTTGTAGTGACATGGGCAACTTTGGACAGATGGAACTCTGGTCCTTCTGGGTATGGTGCTATGTCTTTTGATAGGTATCTAGCTATTCCTGCCTCGTTTAAAAGGGTCTTCTCTTGTTTTAATGTGGCGATATTCTTATGCTCTCCACTGGAAAAGTTCTCCTTTACACCTCTGTCATTATAACGCACCTTCATTTCCCTTTTCCCCCAAGTTTGGACATAGCTGCTTGATGGAAGATCTGCGGTCTGATAGATGTAGATAGCTCTTGTCAATCCACAATGAGTGAATAACTTTGTTTGGAGACTTGCCGCTTGATTGTAGAGTAGAGTTTCAGATTGGCGGCCTTCAGTTGATGTCTCCCCACTGTATGGCAGCTGAAATGTCCCAATCGTATGTTTGTATCTATATATACTGACTCTGATCCTTAAGGCTGTGTTTAGACTTGCAGCCCGTTTCTGATCTTTTTTCCACTAGTTGGTCTTCTGACCAATAACGTCAGaccttttcacatcagatctttttcagagctgatctgattggtcaaaaataTCAGAATTAGGCTGTCTGTGTAAACAAAGCCTTTTTGTAACTGAAGTCT
>TU720396
CCTGATCCGACCAAATAATTCCTCTCACAACGCTCACATTACAAACATGCTGAGAGAAACTGCTATGAATCTGCCAGGGGAGAGCGGTGCAGAGGAACAGGATCTCTGAGAGAATAGTAATATACCTGGGGTGAGGGGTCTGAAGATGGATATGACCAGATGGAGGGTAGTAGGAGGTTGTGGATGTGGTGGGTTGCTGCTGAGTGCATGTCTTCAGCACTAGCGGAGTGCCATCAATCCCTTCTATCTGTTTAGAAAGGTGTCTTATTGCTCTGTGAACTGTATAAAGGCAGTAGATTAGGGGACTGTGTTAACCAAGAGGTTATGACTTTACTGTGTGAGAATAATAGTCAATACTGAGCTGTAAAAGATCGAAATGAGAAAGACCAGTGCAGCTCGTTTTGGTAATATTTTTCATGTATCAAATGGATTTGTGAGTCTGTGCTGCCCTCTAGTGGGTATTACAATAAAGCCCTTGTGAGCACTAAGCACTGAATATGAGAAGTAATGTGCTTCTTTGTATGAAAAATACTGTACCTAAATATGAGAAAATATAtgtaacattatttttttttaaatgtagaaatAGCTGTTCATGGAAACAATggatactgagtgtacaaaacattaagaacaccttcctaatgttgagtagtgcccccttttgccctcagaacagtctcaactCATTGGaccatggactccacaaggtgtcaagcatttcacagggatgctggtccatgttccctccaatgcttcccacagttgtgtcaagttggctggatgccctttgttcgggtggtggaccattcttgataaactGTTGAGTGaaaaaaacagcagcgttgcagttcttgacacaaaccagtgcccATGGCACCTAATACCATACCCCGTTTGAAGGAACTTGaatattttgccttgcccattcactctctgaatggcacacatacacaatccatgtctcttgAGTTGGATcgaggtcagcacctcaggagtaaatgtcagttggcttttcatagccgatcattcagagttagagacagcaggtgcggtagagagagtgtccaaaacagcaggtctgggacaggtagcacattcggtgaacaggtcagggttccatagccgcaaggagaacagttgaaactggagcagcagcacgaccaggtggactggggacagaaagGGGTCATCAGACTAGGTAGtcccgaggcatggtcctagggctcaggtcTTTGTTTGGAGACTTGCTGCTTGATTGTAGAGTTTCAGATTGGCGGCCTTCAGTTGATGTCTCCCCACTTTTGGACATAGCTGCTTGATGGAAGATCTGCGGTCTGATAGATGTAGATAGCTCTTGTCAATCCACAATGAGTGAATAACTTTGTTTGGAGACTTGCCGCTTGATTGTAGAGTAGAGTTTCAGATTGGCGGCCTTCAGTTGATGTCTCCCCACTGTATGGCAGCTGAAATGTCCCAATCGTATGTTTGTATCTATATATACTGACTCTGATCCTTAAGGCTGTGTTTAGACTTGCAGCCCGTTTCTGATCTTTTTTCCACTAGTTGGTCTTCTGACCAATAACGTCAGaccttttcacatcagatctttttcagagctgatctgattggtcaaaaataTCAGAATTAGGCTGTCTGTGTAAACAAAGCCTTTTTGTAACTGAAGTCT
>TU720395
CCTGATCCGACCAAATAATTCCTCTCACAACGCTCACATTACAAACATGCTGAGAGAAACTGCTATGAATCTGCCAGGGGAGAGCGGTGCAGAGGAACAGGATCTCTGAGAGAATAGTAATATACCTGGGGTGAGGGGTCTGAAGATGGATATGACCAGATGGAGGGTAGTAGGAGGTTGTGGATGTGGTGGGTTGCTGCTGAGTGCATGTCTTCAGCACTAGCGGAGTGCCATCAATCCCTTCTATCTGTTTAGAAAGGTGTCTTATTGCTCTGTGAACTGTATAAAGGCAGTAGATTAGGGGACTGTGTTAACCAAGAGGTTATGACTTTACTGTGTGAGAATAATAGTCAATACTGAGCTGTAAAAGATCGAAATGAGAAAGACCAGTGCAGCTCGTTTTGGTAATATTTTTCATGTATCAAATGGATTTGTGAGTCTGTGCTGCCCTCTAGTGGGTATTACAATAAAGCCCTTGTGAGCACTAAGCACTGAATATGAGAAGTAATGTGCTTCTTTGTATGAAAAATACTGTACCTAAATATGAGAAAATATAtgtaacattatttttttttaaatgtagaaatAGCTGTTCATGGAAACAATggatactgagtgtacaaaacattaagaacaccttcctaatgttgagtagtgcccccttttgccctcagaacagtctcaactCATTGGaccatggactccacaaggtgtcaagcatttcacagggatgctggtccatgttccctccaatgcttcccacagttgtgtcaagttggctggatgccctttgttTGGGtattggaccattcttgatacacacaggaaactgttgagcaggAAAAACCCAGCAaagttgcaattcttgacacaatgtctcaccctgaccatagtttgctttgtatgtttctatgttttgtttggtcagggtgtgatctgagtgggcattctatgttggatgtcttgtttgtctgtttctgtgtttgggcctgatatggttctcaatcagaggcaggtattagtcattgtctctgattgggagccatatttaggtagcctgttttgtgttgggttttgtgggtggttgtctcctgtgtcagtgtttgtaccacacgggactgtttcgggtcttcacgtttcttgttttgtagtttattcatatatagtttcattattaaagaaccatgaattataaccacgctgcattttggtccgcctctccttcccaggaggaaTCCCGTTACACACAAACCAGTGCCCatggcacctactgccataccctATTTGAATTCAcatcaatcttttgtcttgccaaatcattctgaatggcacatatacataatccatgtctcaattgtctcaaagcttaataatccttctttaacctgg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU720393 False 1735 lncRNA 0.41 4 62840892 62843326
TU720396 False 1690 lncRNA 0.44 4 62840892 62881773
TU720395 True 1389 lncRNA 0.42 2 62862528 62881773

Neighbor

gene id symbol gene type direction distance location
LOC110528182 LOC106583165 coding downstream 18467 62646982 ~ 62822425 (-)
LOC110528181 LOC106583167 coding downstream 224150 62612769 ~ 62616742 (-)
slc4a8 LOC106583168 coding downstream 251144 62538333 ~ 62589748 (-)
LOC118965401 NA coding downstream 295765 62544984 ~ 62545127 (-)
LOC118965309 LOC106583169 coding downstream 320374 62506239 ~ 62520518 (-)
LOC110528187 LOC106583162 coding upstream 513 62882286 ~ 62900930 (-)
si:dkey-28n18.9 LOC106583160 coding upstream 101346 62983119 ~ 63008072 (-)
LOC110528994 LOC106583141 coding upstream 246417 63128190 ~ 63142500 (-)
LOC110528195 LOC106565465 coding upstream 409054 63290827 ~ 63297342 (-)
nr1d4b LOC106583303 coding upstream 437367 63319140 ~ 63332492 (-)
G633809 NA non-coding downstream 27972 62811424 ~ 62812920 (-)
G633728 NA non-coding downstream 208731 62631926 ~ 62632161 (-)
G633711 NA non-coding downstream 218748 62621818 ~ 62622144 (-)
G633722 NA non-coding downstream 219384 62620932 ~ 62621508 (-)
G633865 NA non-coding upstream 45782 62927555 ~ 62927951 (-)
G633877 NA non-coding upstream 57896 62939669 ~ 62939896 (-)
G633878 NA non-coding upstream 58582 62940355 ~ 62940557 (-)
G633880 NA non-coding upstream 59816 62941589 ~ 62941908 (-)
G633895 NA non-coding upstream 85872 62967645 ~ 62967914 (-)
G632994 LOC106583176 other downstream 618842 62221272 ~ 62222445 (-)
G632459 NA other downstream 1149248 61691248 ~ 61691644 (-)
G631687 emc3 other downstream 1641454 61198007 ~ 61199438 (-)
G631740 NA other downstream 1649847 61190708 ~ 61191045 (-)
LOC110528212 LOC106583293 other upstream 903999 63785772 ~ 63827547 (-)
LOC110528216 LOC106565449 other upstream 1112743 63993536 ~ 64036771 (-)
G635167 NA other upstream 1150673 64032446 ~ 64035381 (-)
G636055 LOC100380681 other upstream 1436421 64318194 ~ 64326230 (-)

Expression


Co-expression Network