XLOC_025500 (tbc1d10b)


Basic Information

Item Value
gene id XLOC_025500
gene name tbc1d10b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32789605 ~ 32811362 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050282
CACGGCGAGATGTAGGGCCGTGTTTATCTTTTCCAGTGATGCGGCCCAAGTCATATTTTATGGAGGTTCCTTGACATTTTTAAAACGCACCGCAAAACTCAATGCCAACAGTGAAACGGATCTGTTTGCGCGTGGATGAGAGGGAAGCCAGTGCAGAGCGGCAGTGTTTAGCTAACGCCGTTAGCTCAGCAACACACCACCCGCCACACACAGACCCATAACCGCACTTTTAGGTTCATCATTCCAAGTTCTTCATCGTCCCAGAGGCTTAACGTTACCAGCGGCCTGCCTCCCTCGCTTCTTACATCCGTTCATCGGTGGCGGCGGGGGGGTCACGATAACCGGAGCGAATAGGAGCCCCCCCGGGTCGGACGGACAGATCCCTCAGCTGCGGTGAGTCTGCACACTCTCTGTTATCTTCTCTCAGAATTGACAGATGCGATCCGTATTACTGAGGAGCAGAAGCTATGGCTGAAATCACCACCATCACTCCCTCCCCTCCTGGTATGGGTGAACAACCAGTGCCTGCTCCCTCCAGCCCACAGCCTCTCCCCTCAGAAACTCCCATCCCAAAATCCTCTCTCTATGGTGATCGAGCCGTGATGGGAAACCCTACATTACAGACAGGTGGAAGAAATTCTTCATCTTGGGAGAGCACACCTGGCCAAAACAGTACCTCATCCTCTTCAGTGGGAACTAAGAGCACTGCTGGTCCGCCAGCAGAGGTACTCGCTGCTACACAAGGAGAAACTAATGGGAAAGATGATTTGGTTGAGCAGCACGCTGAATCGCAGAGCTCAGAGCAGGAGCAACAGATGCCGCCATCGCCTGAACTTAATCCCAGTCCTAATCTCTATCCCAATGTTCAAGTCAGCCAGACTTCCAGTCCCGCTCCCCCCATAGACATTCCTCCTCAATCTACACCTCCTCCCCTTCCCAACTCCAACCCGGCCCTCTCTTCGCAAGACTCCAGGCAAACAGAAGCACAAGCAGTCCCGGAGCCCGAACCCAACACTCCAAGCACCACCATGATGACTCATGAACTCCCCTGCACACCCTCCAGAGCTGAACCTCCAGCAGTACTGGTGCATGAGTCTGCTGGGTCATTGGGTCTGCCCTCTACATACAGACGACCGGCCCCAGACACGCTCAGCTACCTGGAGTCTGCCAGCCTCATGTCAGGCACACTGGAGTCTCTGTCGGGGCTCGGCGAGGACGGCAGCTCCATTGGCTCAGACTCTGAGATCAACGGTCCAGTGAGGAAAACTGATAAATACGGCTTCCTGGGAGGAGCGCAGTACAGTGAGAccaaTGAGGCAGAGCTCGCTGTGGCTGTGGCCAGACAGAGGGAGATGAAATGGCTTGACATGTTCAGAAACTGGGACAAATGGGTATCCCGACGCTTTCAAAAGGTTAAAATGCGCTGCAGAAAAGGAATCCCCTCATCGCTCAGAGCTAAAGCCTGGCAGCTGCTTTCCAACAGCCAGGAGCTCCTTGACTCCAATCCTGGGAAGTTTGAGGAGTTGGAGCAGGAGCAGGGGGATCCCAAGTGGTTGGACATCATAGAGAAGGACTTGCACAGGCAGTTTCCATTTCACGAGATGTTTGCTGCTCGCGGAGGACACGGGCAGCAGGACCTGTACCGTATACTGAAAGCCTACACCGTCTACCGGCCAGATGAGGGCTACTGTCAGGCCCAGGCTCCAGTGGCTGCGGTGCTGCTCATGCACATGCCTGCTGAGCAAGCCTTCTGGTGTCTGGTGCAAATCTGTGAGAAATTCTTGCCTGGCTACTACAGTGCTGGTTTGGAAGCGATCCAGCTggatggagagatttttttctctcttctgaGGAGAGTGTGTCCCATGGCCTACCGTCACCTGAAGAAATTTAAGATTGACCCTATACTCTATATGACAGAATGGTTCATGTGCATTTTCTCCCGCACACTGCCTTGGTCTTGTGTTCTGCGGGTCTGGGACATGTTCTTCTGTGAAGGAGTGAAGATCGTGTTTAGGGTGGGTTTGGTGCTCCTCAAGCAGATGTTGGGGTCTGTGGATAAGCTCCGGGAACTGCAGGGCATGTACGAGACTATGGATCGTCTGAGGAATATCCCGCCCGAATCTATTAAGGAGGATGTTCTGGTGCAAGAGGTGATCTCTCTGTCTGTGACTGAGGCCCTCATCGAGAGGGAGTGCAGTATTCAGGTGCGTAAGTGGCGGGAATCTCGTGGAGAGTTGACTCACCAGCCGGTGCGCCGTTTGCATGGCACAAGGGCCATCTACGAGCAGAAACAGCGGGCTGCTGCAATCAGCTCTGGTGGGAGCCTGTCATTCCTGGGCGCTCATGTCCCTCCACCTGGGCCTTTACGTGCTTCATCAAGCCTCCTGTCACTTCCTGGACTTAGAAAGTCCAAGACGCCGTttcattcacaaaataaaaagGGCTCCATCTCTGGCAGTTTGGGTCAGGATATCGTTCCACTGCAGCCCCTTGGTGGTGGCACCAGCGCAGTGGCTTCAAAACCTCCAATGCCACATGCCACTAACACGGGAGCCAGTGTGCGTCCCCCAGCTCCACATGGGCCTAGTCCGCTAGCTACGACATCATCTACTACCACACCACCTGCTCCAACCGCACACGCATCCACTGCAAACATGCTCCAGCCCTCACCTAAAGTTGTGTCTGAGCACATCACCCCCACAATCCCATCACCCACTGCAAACAACGCACCATTACCACCCTGCCCAGAGATCACAAAAACGGCAGTGGAGGAAGacgggaagaagaagaagaaaaccaAGGAGGACAAGAAGCgggagaaagaggaggagaagcAGAAATCCCGTGAGAAGAAAGAGAAGGAGAAGAACGAGAAGGAAAGGCTGAAGAAGGAGAAGGAAAAAGCTGAGAAGGAGAAGAAAAAGGAGAAGGGGAGTAAGAAAAAGGACAAAAGCGGAGCTGGAGGAGAGACTGAAGAGAAGAATGGAGCCGCAGCGGCGAAAGATTTGGCCTAATTTTTGCCGTTCCTTCAGCAAGAAGAAGAATAAGAACAGGAGAATGCAGGACAAAAGAGGACAAGGAATTAAAATGTCTTCAGGccaagagagagaaacagagagggAAAATGAACAATCTCCTCTAACATCCATTTCATCTCAAGAACTCATTTCACAAAGATAACTAGACCACTGCATCTGCCCTGCCTTCCTCATGGTCTCATCTGCACAGTGTTTTCACCCAGTGCCGAAACAGGAAGgggttatttatttgtttttggaaGGTGGATGCCTGCTTGATGAGATCGGCTGTATGATTAGTTATATTTCTAGAGTACTGGGTGCCATGATATACAGAGACCTCTAGCGCCATCTGTGCCAGTCCTGTCCCGCTCAATCCCCCACTGTCCATCATTCACAAGAGAGGGGTCTCAAAACCAGAATACCTGAATAAAACATTTCTGCTGCATGACGGTGTGCGGCGGTGACTAGTAATAACTTATCTGTGAGTGTTCTGGAGGACCTATTTATTCATCGTACTGTTGAttgttagtgtgtgtttgtgtgttcttgtATGTCTGTGCCTTGGCAGTGTAGTGAATCGTGTcacattctcgtgctgcagacgGGTCTCGCCGCTTCCCTGAGGAACTTGTCCTTCCAGTCTCAGTCTTTTGGGGGACTTGTATGTTTTGGGGAGTGGTTGAACAGCATGGAAAAGGTACGTTCTTCTTAACAGTGGAAACGGACACTTTTAGCTATCCCAGTTAACCTAAGAAATAAAAGATCAATATAAACATCGTCTATTTCCACTCAGAGACCCCCAAACCATAAAATAGATATTAGCCTGTTCTGAGATTCACTCCGAAGTCTTCTCTTTGTTCTTTTTCGAACTAATGGCATTACATAAATTgcagaaaatgtttaaaatgatctaCCGAGCGTGTAGGTCACTCCAGGTATCTGTGTGGTTTGATGTTAAATATCTTGATGTTGATATGGGTGTCAGTTCAGACTAGGATCTTAACAAATGTATGCACTGAGGCCTGTTGATTTTCACCACTGATCGGTTCTTTAATGTAGGCACTCTCTAATCCAGCTCACACGACTCCTTAAGTCTGCACCTTGTTCATTGGGAAGGTTTTGGTGCAGCGCTGTAGCATTAACCTTTGACCTCTGAAGCCCTTTGCTTCAGGTTGTAATGTTTTGACGtgtaaaaacttaatttaaccGGATGGAACCATATAATATCTATTACAGCTGTTATTAGTCTTGTTTtggattagatttttttatttttctacgcTGGAGGCCTGGTAGACTGGAATGGCAGTGAGTTTTGTTTTACGAGAGTGTTGTATTTAATCACAGGATtgatatttctgttatttttaagcgctgaaaattatttttgcacatttcttCTCCCAACATCCTGGAGAACAAATCTaagcagttattatttatttagacatTTTATAATCACTCGCTtgtctgcagtatttgtggtTTGGGAGATGGTGGTTTAATActgattattgtttattttttcgaGTGCGTTATGATTATTGTGTCCCATTGAAGGGGGAAATTAGCCCAAAGAGTTGTGAGAGAAAAGATTTTGTGTTTATCAAATATCGTCCTTAACAAAACCTTCACCCAAACAGTGTTACTCCTTGTTTGAAGTGAACACCGATTGAACCTGTAATCCACTGACCCCTCAGTATTATGAATAATTTGATGCATTCACCAGGTGATTGGACCATGCTTTTAGGACTTTCAGCATATAGTATTTTCTGTCAAGGCAGAGTAGATCTGAAGTAGTATCTGGGTTGCAATACAGTAGCCAAATACTCAATGTTAATATTGTAATGGCGTCTCATGTGTTTACTAGACTTGTTGCATCATTCAGTCTCAACTGCAGGAAGTCCGTTTTCCTCCTGACCTGTCAGTAGTGCCCTAACTGACCTCAATGGTCATTGCTTCCTCTTAAGGCACTACTGTTCAAAAAGAAAGCAAGCAAATTATGTCTATGCAAACTTTGTTTTTAACTTTCCGCACAACGAAACCCAAGAACTGTTGAAGGAAACGTGGAGTGGGATGCAAGTGGTTAGATCCAGATCACCCGGATGATCTAGATTTATTAACCTGAAGAATTGTTCCAAGCACTAGCATAAACCTGATTTTGTACCTGTCAGGCCATCTTCACTAACACCATCCATCTTGTCTGAATCGCAACCAAGAGTACGACAGGTGGACTTAAAATGTTTGGACGCTGTGCTCACCAATAATTAATGCAAGGCCATCCAGTGTTGGTTTACTAATACTCTGAGACAGCTGGGACAGGGTGTAAAATAGCTTGACTTGTCTTACGGATTTCTGCATTGGTAAATATGCCCCAATGTATGTTGTAGGATCgctgtaaaattaattttaaataatttaagttttgcATTTTACTGTTTGTTTAGGTTAGCACTCTCATCCTGTCCTTTGTATGTCTCATGCTTGTTTTTAAGTTTACatgaaactattttacatttgagaATGAAATAAATTCATAGACAGTTGTTCTAAAACTGCAGAAGAGGAAGTTCACAGTGTATTTAATAATTACAGTTGTGatgaataataaatcataatatattaaAAGCTCCA
>TCONS_00050283
ATTTTATTAAAATCTTATGAGGATTTATTTCGACCAAGACATGACGGCAGCTCCATTGGCTCAGACTCTGAGATCAACGGTCCAGTGAGGAAAACTGATAAATACGGCTTCCTGGGAGGAGCTGAGGCAGAGCTCGCTGTGGCTGTGGCCAGACAGAGGGAGATGAAATGGCTTGACATGTTCAGAAACTGGGACAAATGGGTATCCCGACGCTTTCAAAAGGTTAAAATGCGCTGCAGAAAAGGAATCCCCTCATCGCTCAGAGCTAAAGCCTGGCAGCTtttcttttttttatgtgtgtgtcagGAGTTGGAGCAGGAGCAGGGGGATCCCAAGTGGTTGGACATCATAGAGAAGGACTTGCACAGGCAGTTTCCATTTCACGAGATGTTTGCTGCTCGCGGAGGACACGGGCAGCAGGACCTGTACCGTATACTGAAAGCCTACACCGTCTACCGGCCAGATGAGGGCTACTGTCAGGCCCAGGCTCCAGTGGCTGCGGTGCTGCTCATGCACATGCCTGCTGAGCAAGCCTTCTGGTGTCTGGTGCAAATCTGTGAGAAATTCTTGCCTGGCTACTACAGTGCTGGTTTGGTAAGGCAATCCTGA
>TCONS_00052349
GTGGCTGTGGCCAGACAGAGGGAGATGAAATGGCTTGACATGTTCAGAAACTGGGACAAATGGGTATCCCGACGCTTTCAAAAGGTTAAAATGCGCTGCAGAAAAGGAATCCCCTCATCGCTCAGAGCTAAAGCCTGGCAGCTGCTTTCCAACAGCCAGGAGCTCCTTGACTCCAATCCTGGGAAGTTTGAGGAGTTGGAGCAGGAGCAGGGGGATCCCAAGTGGTTGGACATCATAGAGAAGGACTTGCACAGGCAGTTTCCATTTCACGAGATGTTTGCTGCTCGCGGAGGACACGGGCAGCAGGACCTGTACCGTATACTGAAAGCCTACACCGTCTACCGGCCAGATGAGGGCTACTGTCAGGCCCAGGCTCCAGTGGCTGCGGTGCTGCTCATGCACATGCCTGCTGAGCAAGCCTTCTGGTGTCTGGTGCAAATCTGTGAGAAATTCTTGCCTGGCTACTACAGTGCTGGTTTGGAAGCGATCCAGCTggatggagagatttttttctctcttctgaGGAGAGTGTGTCCCATGGCCTACCGTCACCTGAAGAAATTTAAGATTGACCCTATACTCTATATGACAGAATGGTTCATGTGCATTTTCTCCCGCACACT

Function

symbol description
tbc1d10b Orthologous to human TBC1D10B (TBC1 domain family member 10B).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7754 Orthologous to human TBC1D10B (TBC1 domain family member 10B).

Ensembl:

ensembl_id ENSDARG00000078604

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050282 False 5657 mRNA 0.47 10 32789605 32811362
TCONS_00050283 False 609 mRNA 0.51 8 32791786 32805826
TCONS_00052349 True 623 lncRNA 0.52 6 32799962 32805375

Neighbor

gene id symbol gene type direction distance location
XLOC_025499 hsd3b7 coding upstream 11355 32743946 ~ 32778250 (+)
XLOC_025498 setd1a coding upstream 47027 32714157 ~ 32742578 (+)
XLOC_025497 fus coding upstream 78325 32698424 ~ 32711280 (+)
XLOC_025496 si:dkey-16l2.17 coding upstream 93013 32689707 ~ 32696592 (+)
XLOC_025495 kat8 coding upstream 100277 32681274 ~ 32689328 (+)
XLOC_025501 cd2bp2 coding downstream 20680 32832042 ~ 32842383 (+)
XLOC_025502 prr14 coding downstream 31432 32842794 ~ 32855371 (+)
XLOC_025503 zgc:162613 coding downstream 51368 32862730 ~ 32870055 (+)
XLOC_025504 nbr1b coding downstream 122301 32933663 ~ 32952050 (+)
XLOC_025505 NA coding downstream 165520 32976882 ~ 33029027 (+)
XLOC_025429 BX649540.1 misc upstream 2540569 30248739 ~ 30249036 (+)
XLOC_025492 NA non-coding upstream 131169 32651697 ~ 32658436 (+)
XLOC_025487 FP236454.1 non-coding upstream 218234 32571309 ~ 32571371 (+)
XLOC_025481 CR936975.1 non-coding upstream 312320 32474661 ~ 32477285 (+)
XLOC_025475 NA non-coding upstream 442112 32346134 ~ 32347493 (+)
XLOC_025473 NA non-coding upstream 492602 32293773 ~ 32297003 (+)
XLOC_025506 NA non-coding downstream 229945 33041307 ~ 33043550 (+)
XLOC_025507 NA non-coding downstream 232282 33043644 ~ 33045022 (+)
XLOC_025508 CR392003.1 non-coding downstream 234521 33045883 ~ 33048390 (+)
XLOC_025509 NA non-coding downstream 382006 33193368 ~ 33194715 (+)

Expression


Co-expression Network