XLOC_025501 (cd2bp2)


Basic Information

Item Value
gene id XLOC_025501
gene name cd2bp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32832042 ~ 32842383 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050284
GATGAAACGACAGAGACATGTGCGCGTTTAACAACAgatataatcaataaaataagAGGGGAGTAAATCATTATACATAATTAGAGATACTCTGTGCATAATTTATAAATGTTTCTAATTTAGGCTCTGATCAAATATTTACTAAGTTAGACAGATCAAAGCAGACAACAGTGCATTTGCTTGGTGGAGGCTGCTGGACGGTTGTTTTGCTCTGCATCTTCAATGTATTTCCTGCATTTAATATTTTGCATGACATTTTACAATGAAATTCTCTCTCAAAGTCTAAAGTGAAGCATAGGTCAAATATTTGTTTGGAAATAACAAGACAGACATTTGAAAGCGTAAATCAGGAAGGTGTCTGTACTACAGTGGCGATAGAGGATTGGCTAGATTTACAGGAGTGACGACGTTCCGGTTGTAGTTTTGCTTGAATGGCGCAGCGGGGAGAATAACATTAAGCATGTCGAAAAGGAAAGTGACGTTTCAGGATGGAGATAGTGAGATTACTTTGGAAGAAGAGATTCCGAAGAAAAAGATGGTTGATGGTTTGACTGGCCCAGGATCCAGATTTAAGGAAAAACACTCTTTGGACAGTGATGAGGAAGACGAAGTAGAGGATGTAGACAATAGCAGTAAATATGACATCCTGGCCAGCGATGATGTGGAAGGTCAGGAAGGGGCGACCATTGACTATGATGAGGGTGTACGCATCACTCCTTTTAACCTTGATGAGGAAATGCAGGAGGGACACTTTGATTCAGAGGGAAACTATTTCGTtaacaaagagaaagatatcagggACAACTGGCTGGATAACATTGACTGG
>TCONS_00050285
GATGAAACGACAGAGACATGTGCGCGTTTAACAACAgatataatcaataaaataagAGGGGAGTAAATCATTATACATAATTAGAGATACTCTGTGCATAATTTATAAATGTTTCTAATTTAGGCTCTGATCAAATATTTACTAAGTTAGACAGATCAAAGCAGACAACAGTGCATTTGCTTGGTGGAGGCTGCTGGACGGTTGTTTTGCTCTGCATCTTCAATGTATTTCCTGCATTTAATATTTTGCATGACATTTTACAATGAAATTCTCTCTCAAAGTCTAAAGTGAAGCATAGGTCAAATATTTGTTTGGAAATAACAAGACAGACATTTGAAAGCGTAAATCAGGAAGGTGTCTGTACTACAGTAGGTAACATTTTCTGGCAATGTGGCAAATCAAGTGATGTACGTGAGGCAAGACGTGAGGTCACTGAAGCGTTGGACGTCATTCTCTTGGCTCCCCTCTAGGTGGCGATAGAGGATTGGCTAGATTTACAGGAGTGACGACGTTCCGGTTGTAGTTTTGCTTGAATGGCGCAGCGGGGAGAATAACATTAAGCATGTCGAAAAGGAAAGTGACGTTTCAGGATGGAGATAGTGAGATTACTTTGGAAGAAGAGATTCCGAAGAAAAAGATGGTTGATGGTTTGACTGGCCCAGGATCCAGATTTAAGGAAAAACACTCTTTGGACAGTGATGAGGAAGACGAAGTAGAGGATGTAGACAATAGCAGTAAATATGACATCCTGGCCAGCGATGATGTGGAAGGTCAGGAAGGGGCGACCATTGACTATGATGAGGGTGTACGCATCACTCCTTTTAACCTTGATGAGGAAATGCAGGAGGGACACTTTGATTCAGAGGGAAACTATTTCGTtaacaaagagaaagatatcagggACAACTGGCTGGATAACATTGACTGGGTGAAGGTAAAAGAGCAGCCTGTGAAAAAGAAGAAAGGCCTTGCAGCTAAGAGGAAGAGAAGAGTTGGTGATGAAGATGAGGCTGAGGAGGAGATAAAACGAGAGGAGCAGAGGAATGACAGTGAAGATGAGgaggaagagaaagagaaagagccGGCAGAAGACCCTCTGGCTGCATACAGTCATTATCAACTCACAGAAGCCATCATTGAGCTGCTACTGCCCGGAGAAACTGTGTCTGCTGCTCTAAGAAGACTTGGTGGTCTTGGAGGACAGAAGAAGAAAGGAAGACAAAGAAATGGAGAGGAAGAGAAAAAGGAGGCTTCAAACAGAGATGCCGATAAACTTGACAAACTGACAGCATTGGCAGATAGACTGGTGGGCATTGGAGAGTTTGAAATCTATCAGCAGACATATGAAAAACTGGCCTACCAGCTGAAGGGGATGACTAGAGGAAAAGCAGCCAAAACACTAGGGGATGAAGAGGAGGATAAAGATGAGCTTGACATGTTTGGTGATGACTTTGATGAGAAGCATGATGCGGATAAAAATGAGGATAATGATAACAGGAAAGTGAGTGATGAGGTCATGTGGGAGTACAAGTGGGAAAATAAGGAAAGCTCTGAGCTCTACGGACCCTTCAGCAGCCAACAAATGCAGGACTGGGTGGATGAGGGCTACTTCAATGATGGAGTCTACTGCAGGAGGATTGACCAGGAAGGCGCTTCATTCTACAACTCAAAGAGGATAGACTTCGATCTTTACACATGAACTGTCTATAAATCATTTTACtggttttatttgatttcttcaGCCCTTTCGAGAGAGCCTTTCTGAGCAATTGTTTACTCTGCAATAATTGACTTGTGTGCCCACACACATTGGTATGTGCACCTGTGTTTATAcgtgatgttgttttaaaataaagtcttttCTGGCTGGA
>TCONS_00050286
ACAGGAGTGACGACGTTCCGGTTGTAGTTTTGCTTGAATGGCGCAGCGGGGAGAATAACATTAAGGCAATTGTGTCTCTTAGCATGTCGAAAAGGAAAGTGACGTTTCAGGATGGAGATAGTGAGATTACTTTGGAAGAAGAGATTCCGAAGAAAAAGATGGTTGATGGTTTGACTGGCCCAGGATCCAGATTTAAGGAAAAACACTCTTTGGACAGTGATGAGGAAGACGAAGTAGAGGATGTAGACAATAGCAGTAAATATGACATCCTGGCCAGCGATGATGTGGAAGGTCAGGAAGGGGCGACCATTGACTATGATGAGGGTGTACGCATCACTCCTTTTAACCTTGATGAGGAAATGCAGGAGGGACACTTTGATTCAGAGGGAAACTATTTCGTtaacaaagagaaagatatcagggACAACTGGCTGGATAACATTGACTGGGTGAAGGTAAAAGAGCAGCCTGTGAAAAAGAAGAAAGGCCTTGCAGCTAAGAGGAAGAGAAGAGTTGGTGATGAAGATGAGGCTGAGGAGGAGATAAAACGAGAGGAGCAGAGGAATGACAGTGAAGATGAGgagga
>TCONS_00050287
TAGCATGTCGAAAAGGAAAGTGACGTTTCAGGATGGAGATAGTGAGATTACTTTGGAAGAAGAGATTCCGAAGAAAAAGATGGTTGATGGTTTGACTGGCCCAGGATCCAGATTTAAGGAAAAACACTCTTTGGACAGTGATGAGGAAGACGAAGTAGAGGATGTAGACAATAGCAGTAAATATGACATCCTGGCCAGCGATGATGTGGAAGGTCAGGAAGGGGCGACCATTGACTATGATGAGGGTGTACGCATCACTCCTTTTAACCTTGATGAGGAAATGCAGGAGGGACACTTTGATTCAGAGGGAAACTATTTCGTtaacaaagagaaagatatcagggACAACTGGCTGGATAACATTGACTGGGTGAAGGTAAAAGAGCAGCCTGTGAAAAAGAAGAAAGGCCTTGCAGCTAAGAGGAAGAGAAGAGTTGGTGATGAAGATGAGGCTGAGGAGGAGATAAAACGAGAGGAGCAGAGGAATGACAGTGAAGATGAGgaggaagagaaagagaaagagccGGCAGAAGACCCTCTGGCTGCATACAGTCATTATCAACTCACAGAAGCCATCATTGAGCTGCTACTGCCCGGAGAAACTGTGTCTGCTGCTCTAAGAAGACTTGGTGGTCTTGGAGGACAGAAGAAGAAAGGAAGACAAAGAAATGGAGAGGAAGAGAAAAAGGAGGCTTCAAACAGAGATGCCGATAAACTTGACAAACTGACAGCATTGGCAGATAGACTGGTGGGCATTGGAGAGTTTGAAATCTATCAGCAGACATATGAAAAACTGGCCTACCAGCTGAAGGGGATGACTAGAGGAAAAGCAGCCAAAACACTAGGGGATGAAGAGGAGGATAAAGATGAGCTTGACATGTTTGGTGATGACTTTGATGAGAAGCATGATGCGGATAAAAATGAGGATAATGATAACAGGAAAGTGAGTGATGAGGTCATGTGGGAGTACAAGTGGGAAAATAAGGAAAGCTCTGAGCTCTACGGACCCTTCAGCAGCCAACAAATGCAGGACTGGGTGGATGAGGGCTACTTCAATGATGGAGTCTACTGCAGGAGGATTGACCAGGAAGGCGCTTCATTCTACAACTCAAAGAGGATAGACTTCGATCTTTACACATGA

Function

symbol description
cd2bp2 Predicted to be part of U5 snRNP. Orthologous to human CD2BP2 (CD2 cytoplasmic tail binding protein 2).

GO:

id name namespace
GO:0005682 U5 snRNP cellular_component

KEGG:

id description
ko01009 Protein phosphatases and associated proteins
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040426-925 Predicted to be part of U5 snRNP. Orthologous to human CD2BP2 (CD2 cytoplasmic tail binding protein 2).

Ensembl:

ensembl_id ENSDARG00000027357

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050284 False 826 mRNA 0.40 5 32832042 32835628
TCONS_00050285 False 1871 mRNA 0.42 7 32832042 32842383
TCONS_00050286 False 586 mRNA 0.45 5 32832538 32837627
TCONS_00050287 True 1141 mRNA 0.45 6 32833661 32842211

Neighbor

gene id symbol gene type direction distance location
XLOC_025500 tbc1d10b coding upstream 20680 32789605 ~ 32811362 (+)
XLOC_025499 hsd3b7 coding upstream 53792 32743946 ~ 32778250 (+)
XLOC_025498 setd1a coding upstream 89464 32714157 ~ 32742578 (+)
XLOC_025497 fus coding upstream 120762 32698424 ~ 32711280 (+)
XLOC_025496 si:dkey-16l2.17 coding upstream 135450 32689707 ~ 32696592 (+)
XLOC_025502 prr14 coding downstream 411 32842794 ~ 32855371 (+)
XLOC_025503 zgc:162613 coding downstream 20347 32862730 ~ 32870055 (+)
XLOC_025504 nbr1b coding downstream 91280 32933663 ~ 32952050 (+)
XLOC_025505 NA coding downstream 134499 32976882 ~ 33029027 (+)
XLOC_025506 NA coding downstream 198924 33041307 ~ 33043550 (+)
XLOC_025429 BX649540.1 misc upstream 2583006 30248739 ~ 30249036 (+)
XLOC_025492 NA non-coding upstream 173606 32651697 ~ 32658436 (+)
XLOC_025487 FP236454.1 non-coding upstream 260671 32571309 ~ 32571371 (+)
XLOC_025481 CR936975.1 non-coding upstream 354757 32474661 ~ 32477285 (+)
XLOC_025475 NA non-coding upstream 484549 32346134 ~ 32347493 (+)
XLOC_025473 NA non-coding upstream 535039 32293773 ~ 32297003 (+)
XLOC_025507 NA non-coding downstream 201261 33043644 ~ 33045022 (+)
XLOC_025508 CR392003.1 non-coding downstream 203500 33045883 ~ 33048390 (+)
XLOC_025509 NA non-coding downstream 350985 33193368 ~ 33194715 (+)

Expression


Co-expression Network