G634934 (hoxc10)


Basic Information

Item Value
gene id G634934
gene name hoxc10
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 63585937 ~ 63586728 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU721737
GCTCCatacacattttatttatttttgtataggCTTATTTTATATCTTTACAAAACGTCCAGACATACTGTTTGCGATAATTATTTGGAAGAGCATTGACTTTATGATGCTGTAATGCACAGGACATCAAGTTCAgatgaacaaaaaacaacaaaaaacaaaacaacataaaCGAAAGAAAGTCAGAGACCAAGTAAATACATCAAAATTCATCAAAAGTGTATGGAAAACAATTCAAACGCACTACTGTCACTTTAAGACATTTTTCTAAATAATTCATGTCCAGCGTTTTAAAACAATGTGCATCTGGAGAGGTTCATAGCATTTCACTGTCAAGTCCTAAAAACTGAAACGTTTGACAAAACGCTCTAGATGATTTCTCCTGCATGCTTGTAGCGTGTGCAAAGCTGGACCTTGTTTGCCTATGTGTAGCAAACTTCATTAACAATGGAGTGGAGTTTAGTCTGCTAGCTAATGTGTAGCCTAAGTGTAGTTTTTGTGAAGTTTCTCTTCAAATAAGGTGTAGTCATAAGCAGAGGTTAGCGCTCTCACTCGAATCTCCCTGCGGAATTTCTTGACTTTCATGCGTCTGTCAGATAAGTCAATACTCTTGTTCATCTCCAGGCGGCGCTCTCGCGTCAGATACATGTTGAACAATAACTATTTTTCCAGTTCCAGAGTCTGATGTTTGGTGTAAGGACAACGCTTTTTCCGTCCACTTTTAGCTATGATCCAGTTTCCAATGCAATTCTCCAATCTGGTGTCCC

Function

symbol description
hoxc10 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of cold-induced thermogenesis and positive regulation of transcription by RNA polymerase II. Located in nuclear body.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: homeobox protein Hox-C10, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU721737 True 767 lncRNA 0.38 2 63585937 63586728

Neighbor

gene id symbol gene type direction distance location
calcoco1b calcoco1 coding downstream 48353 63464383 ~ 63537584 (-)
nr1d4b LOC106583303 coding downstream 253445 63319140 ~ 63332492 (-)
LOC110528195 LOC106565465 coding downstream 288595 63290827 ~ 63297342 (-)
LOC110528994 LOC106583141 coding downstream 443437 63128190 ~ 63142500 (-)
si:dkey-28n18.9 LOC106583160 coding downstream 577865 62983119 ~ 63008072 (-)
trnar-ucu NA coding upstream 80499 63667227 ~ 63667316 (-)
smug1 smug1 coding upstream 95547 63682275 ~ 63685137 (-)
LOC110528212 LOC106583293 coding upstream 199049 63785772 ~ 63827547 (-)
LOC110528215 LOC106583288 coding upstream 314209 63900937 ~ 63962763 (-)
LOC110528216 LOC106565449 coding upstream 406808 63993536 ~ 64036771 (-)
G634927 NA non-coding downstream 9867 63575761 ~ 63576070 (-)
G634500 NA non-coding downstream 22182 63563413 ~ 63563755 (-)
G634459 NA non-coding downstream 54384 63531318 ~ 63531553 (-)
G634434 NA non-coding downstream 92447 63493283 ~ 63493490 (-)
G634432 NA non-coding downstream 93855 63491847 ~ 63492082 (-)
G634945 NA non-coding upstream 9342 63596070 ~ 63596283 (-)
G634924 NA non-coding upstream 17903 63604631 ~ 63606312 (-)
G634949 NA non-coding upstream 21920 63608648 ~ 63608873 (-)
G634951 NA non-coding upstream 23619 63610347 ~ 63610592 (-)
G634955 NA non-coding upstream 26796 63613524 ~ 63613765 (-)
LOC118965309 LOC106583169 other downstream 1065427 62506239 ~ 62520518 (-)
G632994 LOC106583176 other downstream 1363887 62221272 ~ 62222445 (-)
G632459 NA other downstream 1894293 61691248 ~ 61691644 (-)
G631687 emc3 other downstream 2386499 61198007 ~ 61199438 (-)
G635167 NA other upstream 445718 64032446 ~ 64035381 (-)
G636055 LOC100380681 other upstream 731466 64318194 ~ 64326230 (-)
LOC110528235 LOC106583273 other upstream 935786 64521769 ~ 64526166 (-)

Expression


Co-expression Network