G636055 (LOC100380681)


Basic Information

Item Value
gene id G636055
gene name LOC100380681
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 64318194 ~ 64326230 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU723004
GTAAATGCTGCCATTGCCACCATCAAAACAAAACGCTCCATCCAGTTTGTAGACTGGTGCCCAACTGGTTTCAAGGTTGGTATCAACTACCAGCCACCAACTGTGGTACCTGGTGGAGATCTGGCCAAGGTCCAGAGGGCAGTGTGCATGCTTAGCAACACCACTGCAGTGGCAGAGGCCTGGGCCCGTCTTGACCACAAGTTTGACCTGATGTACGCCAAGCGTGCTTTTGTGCACTGGTACGTAGGTGAgggtatggaggagggagagttcTCTGAGGCCAGGGAGGACATGGCTGCCCTGGAGAAAGATTATGAAGAGGTGGGAGCAGATAGTGTGgagggggaggatgagggagaagaATACTAAACTATTAGGATCAGGAATTTTCAGCCTGTCAACACATTCAACCTTTTTCCTCAACATTCCTTCTAAAACCATTTTTTTGCTGTCCCTTTGTAACCTTGACTTTTAAATGTTGCTCTCTCCTTTAAGCAATAAAAGTCTATTTTAAATGTTTGgaaa
>TU723007
GTAAATGCTGCCATTGCCACCATCAAAACAAAACGCTCCATCCAGTTTGTAGACTGGTGCCCAACTGGTTTCAAGGTTGGTATCAACTACCAGCCACCAACTGTGGTACCTGGTGGAGATCTGGCCAAGGTCCAGAGGGCAGTGTGCATGCTTAGCAACACCACTGCAGTGGCAGAGGCCTGGGCCCGTCTTGACCACAAGTTTGACCTGATGTACGCCAAGCGTGCTTTTGTGCACTGGTACGTAGGTGAgggtatggaggagggagagttcTCTGAGGCCAGGGAGGACATGGCTGCCCTGGAGAAAGATTATGAAGAGGTGGGAGCAGATAGTGTGgagggggaggatgagggagaagaATACTAAACTATTAGGATCAGGAATTTTCAGCCTGTCAACACATTCAACCTTTTTCCTCAACATTCCTTCTAAAACCATTTTTTTGCTGTCCCTTTGTAACCTTGACTTTTAAATGTTGCTCTCTCCTTTAAGCAATAAAAGTCTATTTTAAATGTTTGgaaa
>TU723011
GTAAATGCTGCCATTGCCACCATCAAAACAAAACGCTCCATCCAGTTTGTAGACTGGTGCCCAACTGGTTTCAAGGTTGGTATCAACTACCAGCCACCAACTGTGGTACCTGGTGGAGATCTGGCCAAGGTCCAGAGGGCAGTGTGCATGCTTAGCAACACCACTGCAGTGGCAGAGGCCTGGGCCCGTCTTGACCACAAGTTTGACCTGATGTACGCCAAGCGTGCTTTTGTGCACTGGTACGTAGGTGAgggtatggaggagggagagttcTCTGAGGCCAGGGAGGACATGGCTGCCCTGGAGAAAGATTATGAAGAGGTGGGAGCAGATAGTGTGgagggggaggatgagggagaagaATACTAAACTATTAGGATCAGGAATTTTCAGCCTGTCAACACATTCAACCTTTTTCCTCAACATTCCTTCTAAAACCATTTTTTTGCTGTCCCTTTGTAACCTTGACTTTTAAATGTTGCTCTCTCCTTTAAGCAATAAAAGTCTATTTTAAATGTTTGgaaa
>TU723012
GTAAATGCTGCCATTGCCACCATCAAAACAAAACGCTCCATCCAGTTTGTAGACTGGTGCCCAACTGGTTTCAAGGTTGGTATCAACTACCAGCCACCAACTGTGGTACCTGGTGGAGATCTGGCCAAGGTCCAGAGGGCAGTGTGCATGCTTAGCAACACCACTGCAGTGGCAGAGGCCTGGGCCCGTCTTGACCACAAGTTTGACCTGATGTACGCCAAGCGTGCTTTTGTGCACTGGTACGTAGGTGAgggtatggaggagggagagttcTCTGAGGCCAGGGAGGACATGGCTGCCCTGGAGAAAGATTATGAAGAGGTGGGAGCAGATAGTGTGgagggggaggatgagggagaagaATACTAAACTATTAGGATCAGGAATTTTCAGCCTGTCAACACATTCAACCTTTTTCCTCAACATTCCTTCTAAAACCATTTTTTTGCTGTCCCTTTGTAACCTTGACTTTTAAATGTTGCTCTCTCCTTTAAGCAATAAAAGTCTATTTTAAATGTTTGgaaa
>TU723015
GTAAATGCTGCCATTGCCACCATCAAAACAAAACGCTCCATCCAGTTTGTAGACTGGTGCCCAACTGGTTTCAAGGTTGGTATCAACTACCAGCCACCAACTGTGGTACCTGGTGGAGATCTGGCCAAGGTCCAGAGGGCAGTGTGCATGCTTAGCAACACCACTGCAGTGGCAGAGGCCTGGGCCCGTCTTGACCACAAGTTTGACCTGATGTACGCCAAGCGTGCTTTTGTGCACTGGTACGTAGGTGAgggtatggaggagggagagttcTCTGAGGCCAGGGAGGACATGGCTGCCCTGGAGAAAGATTATGAAGAGGTGGGAGCAGATAGTGTGgagggggaggatgagggagaagaATACTAAACTATTAGGATCAGGAATTTTCAGCCTGTCAACACATTCAACCTTTTTCCTCAACATTCCTTCTAAAACCATTTTTTTGCTGTCCCTTTGTAACCTTGACTTTTAAATGTTGCTCTCTCCTTTAAGCAATAAAAGTCTATTTTAAATGTTTGgaaa

Function

NR:

description
Tubulin alpha-1C chain-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU723004 False 525 TUCP 0.47 2 64318194 64326230
TU723007 False 525 TUCP 0.47 2 64318194 64326230
TU723011 False 525 TUCP 0.47 2 64318194 64326230
TU723012 False 525 TUCP 0.47 2 64318194 64326230
TU723015 True 525 TUCP 0.47 2 64318194 64326230

Neighbor

gene id symbol gene type direction distance location
prph prph coding downstream 14369 64296947 ~ 64303825 (-)
LOC110528997 timeless coding downstream 31258 64272734 ~ 64286936 (-)
LOC110528224 LOC106583281 coding downstream 65787 64231750 ~ 64252407 (-)
LOC110528217 LOC106583286 coding downstream 234836 64050664 ~ 64083358 (-)
LOC110528216 LOC106565449 coding downstream 281423 63993536 ~ 64036771 (-)
LOC110528226 pmel coding upstream 12622 64338852 ~ 64346260 (-)
LOC110528233 LOC106583275 coding upstream 123659 64449889 ~ 64489135 (-)
LOC110528235 LOC106583273 coding upstream 195539 64521769 ~ 64526166 (-)
LOC110528237 LOC106583271 coding upstream 330681 64656911 ~ 64666144 (-)
LOC110528239 LOC106583268 coding upstream 343501 64669731 ~ 64689634 (-)
G635246 NA non-coding downstream 173437 64137001 ~ 64144757 (-)
G635244 NA non-coding downstream 177343 64133204 ~ 64140851 (-)
G635187 NA non-coding downstream 279367 64038556 ~ 64038827 (-)
G636086 LOC107662719 non-coding upstream 26111 64352341 ~ 64352752 (-)
G636111 NA non-coding upstream 70838 64397068 ~ 64397505 (-)
G636139 NA non-coding upstream 119254 64445484 ~ 64451097 (-)
G636219 NA non-coding upstream 218723 64544953 ~ 64545212 (-)
G636224 NA non-coding upstream 225020 64551250 ~ 64551773 (-)
G635167 NA other downstream 282813 64032446 ~ 64035381 (-)
LOC110528212 LOC106583293 other downstream 525414 63785772 ~ 63827547 (-)
si:dkey-28n18.9 LOC106583160 other downstream 1310154 62983119 ~ 63008072 (-)
LOC118965309 LOC106583169 other downstream 1797684 62506239 ~ 62520518 (-)
G636532 LOC106583345 other upstream 808020 65134250 ~ 65134745 (-)
G636533 LOC106583345 other upstream 809308 65135538 ~ 65135795 (-)
G636571 LOC106583344 other upstream 908254 65209760 ~ 65236881 (-)

Expression


Co-expression Network