XLOC_025509


Basic Information

Item Value
gene id XLOC_025509
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33193368 ~ 33194715 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052727
TCTTGCTTCTTTCGGGGGGGGGGTATAGGAGTCCATTATATAACACACACAGACGTGACTGATTAGGCAGGACAGAAACATGCTAAGCATACAAAGTAAACAAATGtccactttttttggaaaagTGATAATAAAACACGCATGTTAATGTCAGATAGAGACATTACAATAATTAGTGTTAGATTGTCTACATGAATCAAAGTAAAAACTGCTACAATACATGCTTTTCTCTATGATTGTATTGAGTCTAATTTTGTGTGATCTCCCTCTGTTTCCCAGAAGCCCTAGGTTGCCCTCTGGTTACCAGGTGATCTTGTTTTTAAAGGTCTTTCCATCTGAGTCCACCGAGAGCACGGTGTTGACATCTCTCTTTTGCCTTTCCTTCTTTCTTACAAAGTCAGCCATGGCACACATAATCCCATTACTGCGGAGCTTTGAAAGAGGGCACAGAAAATGGGAGAAAGAGAGACGAGCTACGTGAACAACTCTTATTGCACACAGTATGAGGAATAATCTGAATTCTTGATCTCATGTCCTAACTGCACACAGTGATTCTAACCTTGCTTCTCTTTTTCCCTACTTTGCAGacagtttttaatgtaaaattgatAGATTGAAGCACAGAAGCGCCTCTATCTGGACGTACAGAGCATGCTGGATGATATGGGAGTCTTTACTGTTTACTGTAAACTGACTTTGCACAGAGGTTAAATATGTTAGTATgcattgatttgatttgtttcatCCAAATGTTGATATTCTGTCTTTGTTTACATCATCATTTATCATTCAAATGCCTTTTTAATTTCTGCAGAAGATCTTGATCAGAACGTTAAAATCAGTCACAATAtaatgttttcttatttaaaatgtttttattgttatattatattacagctCTGTTTGAAGACTaacatttaaaggaatagttctcaCTATAATTTTGCTTACTTACAGTTCAGAGGTTGTAAACATtcatgactttctttctttctctttctttctttctttctttctttccttctttcgaACTCGAAATTAGATATTCTGAATATTTTCCAACATTCTCCAGTACATCTTTgaattcaacaaaagaaagaaagtcaaaccagTTTAGAACAACTggaggagtaaatgatgacagaattcattTTCTGACAAACTATGCTTTAGCTCATTTATCCGAAAGTTTATCGCAGCTTTTGAGTATAATTTACATTTGTGTATGTTAAATTCAAACTGTTTAGGCTTTTGAAAACAGTTTCTTAAGCTCAAATGctgcatttactgtaaaattgtaACCCTGTAAAAAAtaacaccttaaaataaaataacatttttcttttaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052727 True 1348 lncRNA 0.34 1 33193368 33194715

Neighbor

gene id symbol gene type direction distance location
XLOC_025508 CR392003.1 coding upstream 144978 33045883 ~ 33048390 (+)
XLOC_025507 NA coding upstream 148346 33043644 ~ 33045022 (+)
XLOC_025506 NA coding upstream 149818 33041307 ~ 33043550 (+)
XLOC_025505 NA coding upstream 164341 32976882 ~ 33029027 (+)
XLOC_025504 nbr1b coding upstream 241318 32933663 ~ 32952050 (+)
XLOC_025510 hspb9 coding downstream 105807 33300522 ~ 33301321 (+)
XLOC_025511 pyya coding downstream 146224 33340939 ~ 33344780 (+)
XLOC_025512 mpp2a coding downstream 150632 33345347 ~ 33379440 (+)
XLOC_025513 CABZ01012962.1 coding downstream 189567 33384282 ~ 33419664 (+)
XLOC_025514 CR396582.1 coding downstream 212873 33407588 ~ 33407710 (+)
XLOC_025429 BX649540.1 misc upstream 2944332 30248739 ~ 30249036 (+)
XLOC_025492 NA non-coding upstream 534932 32651697 ~ 32658436 (+)
XLOC_025516 CR396582.2 non-coding downstream 255385 33450100 ~ 33450219 (+)
XLOC_025517 NA non-coding downstream 365377 33560092 ~ 33573516 (+)
XLOC_025521 BX649502.3 non-coding downstream 883485 34078200 ~ 34079170 (+)

Expression


Co-expression Network