XLOC_025513 (CABZ01012962.1)


Basic Information

Item Value
gene id XLOC_025513
gene name CABZ01012962.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33384282 ~ 33419664 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050305
CCGCTAGAAAATATAGTGCGTTGCCACGCCACAGTAGGTCACAACTCTATCTAACGCATGCGCAGTAATATTATATTCAGGTGTTTCTCTCATGAGCAGGACCCGATTCATGAACTATACGTGTTTTATTTTAAGCGTCATTAAATGTCTCGCTTTTGACAACTGGACAATTTCGAGTGAATGAAAATGTGGATTGAGAAGACAACAAGGACAGTGAGGACGGATCTTCCTTTGATGTAACAGTGCTGGACTTTGACCTCTGAGGGTGCAGCTCTTGTTGACCACGAAGAGCAAAATTCCACACAGTAAGT
>TCONS_00052728
TGTTTCTCTCATGAGCAGGACCCGATTCATGAACTATACGTGTTTTATTTTAAGCGTCATTAAATGTCTCGCTTTTGACAACTGGACAATTTCGAGTGAATGAAAATGTGGATTGAGAAGACAACAAGGACAGTGAGGACGGATCTTCCTTTGATGTAACAGTGCTGGACTTTGACCTCTGAGGGTGCAGCTCTTGTTGACCACGAAGAGCAAAATTCCACACAAAGAACTAGAATTGCCAGGCTGGACTCAAGATGATGGGACAGTAAAGTGTCCACTGGATGCACATTTCATTATCTCACTGGAGGAAGCTATTAGTAGCCTACATATTACTCCTGTCTCTTACAGTTTTGTATATACCAGAGGGGCCCAAACTTTTTGTTATGAAGGGCctaaaaccaaacttgattgaggctagtgggcagaaggtaaatatagttgccataaGTAATTTCCTAGTTTATTTAATGCTTAGAGATTACTAAAAAACATTGCATTATATTAACTGATACAGGTTATTTACATTtgataatgaacttattacaataaaaacaaaacatttcatttctAGCAGAATTActctagtttttgccttgatttgcttgccgaTGTCTTCTGTAAAGTCCTCTAtccgtcgagtgacagtatttacattttataaaattagattaatttactacatttaattgaaacattttatttcagtttcatttttttgtagctcagcaataaaacaaacataaaaggtTACGTCAAgttagaaatgacaatctttgTGTGAAAGGCGTTCgtcccaaccctctccatcatactCACTTCTCCTCCTAAgttgggatggtgggccaaatcaaaggttacaatgggccaactttggccaacaggccctactttgggcatctctggtataTACTAGGAAACTATGCAGCAACAGAGTCTTAGAAGTACCATTGCAGGAGAGGGCCTcagagtcaaaaagaaaatgttgaaaaccaCTGATGTAAAGTGAAATtcctattattatttatgtaaaagCAGAATTTTCACTTGTGGCGTCAGTTTTGATGTTCTGATGAAAATAAGTAATTCAGcttactttaaacatttatataaaagtAGAGATTTTATTACCATTCTCACTCCgagaacaaaaacatttaaaattcacACTGAGAAAATTCAtttcatgcatttattaatttcaccTTGGACTCAACAGTAAATGTGCATTAGTATTTAACTTAGTGCTGCCAAATGATTAACCATGAg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103039

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050305 False 311 lncRNA 0.43 2 33384282 33388967
TCONS_00052728 True 1266 lncRNA 0.36 3 33384363 33419664

Neighbor

gene id symbol gene type direction distance location
XLOC_025512 mpp2a coding upstream 4842 33345347 ~ 33379440 (+)
XLOC_025511 pyya coding upstream 39502 33340939 ~ 33344780 (+)
XLOC_025510 hspb9 coding upstream 82961 33300522 ~ 33301321 (+)
XLOC_025509 NA coding upstream 189567 33193368 ~ 33194715 (+)
XLOC_025508 CR392003.1 coding upstream 335892 33045883 ~ 33048390 (+)
XLOC_025515 gtpbp1 coding downstream 20951 33440615 ~ 33459764 (+)
XLOC_025516 CR396582.2 coding downstream 30436 33450100 ~ 33450219 (+)
XLOC_025517 NA coding downstream 140428 33560092 ~ 33573516 (+)
XLOC_025518 nacc1a coding downstream 325350 33745014 ~ 33754115 (+)
XLOC_025519 ier2a coding downstream 341885 33761549 ~ 33762726 (+)
XLOC_025429 BX649540.1 misc upstream 3135246 30248739 ~ 30249036 (+)
XLOC_025507 NA non-coding upstream 339260 33043644 ~ 33045022 (+)
XLOC_025506 NA non-coding upstream 340732 33041307 ~ 33043550 (+)
XLOC_025505 NA non-coding upstream 355255 32976882 ~ 33029027 (+)
XLOC_025521 BX649502.3 non-coding downstream 658536 34078200 ~ 34079170 (+)
XLOC_025522 NA non-coding downstream 687538 34107202 ~ 34113701 (+)
XLOC_025525 NA non-coding downstream 720699 34140363 ~ 34147094 (+)

Expression


Co-expression Network