XLOC_025515 (gtpbp1)


Basic Information

Item Value
gene id XLOC_025515
gene name gtpbp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33440615 ~ 33459764 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050307
ATTTAAACAAACACGTAAATGTGTGAAGTGAGGAACCGTCTGATTTCAGTCTAGCCGATTATCTGTTTAGCATGTTGTCCTGATAGCAGTAATATGTAGCGATACTTGTTTATCTCGACGCAGCAGGTTTTAACCTAGCGGTGAGCGGCGTTACAGTCTGAATGTGTTTGTGCTGTATCAGCTTACAATTGTTCCCCCAAAAGTCGCATCGTTTTAAAGTTGTTTAAGCTAAATTTTAATAGCCGCTGCCCGAGAGATGGCATCGTTAACAACGACGGATCCTGTTTTTAATCCTGGGGCCATGGGGCTACCAGAGTCTGTTGTTCCCGCTAGCATGTTCGCTCCAGGTCGGGGATGCGGCGATGATGACGAGTCGGATTGCTTCGATGACGGGGACATGTTCAACGGCGAGACCGTGGATCTCGGCATCGACTTCTCCAGCAAGCTAGCCCTAGTCAGTCCCAATGGTGAACAGTATGACTTATTACTACGGCAGCTGCGTGAGAGGATGGACGAGGGCTGCGGGGAGACAATCTATGTTTTGGGGGTGGGTTCAGATGGAGGAGACTATGGATTGAATGAGAGTGACATGCAAGCGTCTGTGGCCACAGTGAGGTCCATGTGTGAGCAGATCGAGGCGGACCTCATCTTGTTGAGAGAGCGCACTGAGGCTGGCGGCCAGGTCAGAGATTATCTGATTCGTCGCCGGGTAGGAGAAGCAGACTTTTTAGAAGTTAGGGTGGCTGTAGTGGGGAATGTGGATGCCGGTAAGAGCACACTTCTGGGTGTGCTGACTCATGGAGAGTTGGATAATGGCCGTGGCTTTGCGCGACAGAAGCTCTTCAGGCACAAGCACGAAATGGAGAGTGGCCGCACCAGCAGTGTGGGCAATGACATCCTAGGATTTGATCAGGAAGGCCAGGTAGTCAACAAACCAGACAGTCACGGAGGCAGCCTGGATTGGACCAAGATCTGCGAGAAGTCTTCTAAAGTCATTACATTTATTGACCTTGCTGGCCATGAGAAGTACCTGAAGACGACTGTGTTTGGAATGACTGGTCATCTGCCAGATTTCTGCATGCTGATGATTGGAAGTAACGCAGGAATTGTTGGCATGACCAAAGAGCACCTGGGTTTGGCATTGGCCCTCAACGTTCCTGTGTTTGTAGTGGTTACTAAGATTGACATGTGTCCTGCTAATATACTTCAAGAAACCCTGAAGCTTCTCCAAAAGATATTGAAGTCTCCAGGCTGCAGAAAGATCCCTGTCCTAGTTCAGAACAAAGATGATGTCATCGTCACAGCGTCCAACTTCAGCTCTGAGAGaaTATGTCCAATCTTCCAGATCTCTAACGTCACAGGAGAGAACATGGACCTACTAAAGATGTTCCTGAACTTGCTGTCCTCCAGAAGCTCATTCAAAGACCACGAGCCTGCTGAATTCCAGATAGACGACACATATTCAGTACCAgGTGTAGGAACGGTAGTATCTGGAACTACGCTACGAGGGCTGATTCGACTCAACGACACTTTGCTTCTTGGGCCAGACCCGCTGGGTGCTTTTCTCTCCATCACTGTCAAATCCATTCACCGCAAGAGGATGCCTGTAAAAGAGGTCCGCGGTGGACAGACCGCCTCTTTTGCTCTGAAAAAGATCAAGCGCTCTTCAATAAGGAAAGGAATGGTCATGGTGTCGCCAAGATTAAACCCACAGGCATACTGGGAGTTTGAGGCGGAGATACTAGTTTTACATCACCCGACAACCATCTCACCTAGATATCAAGCAATGGTGCACTGCGGTAGCATAAGGCAGACAGCCACTATCCTGTCTATGACCAGAGACTGCTTACGCACAGGAGACAAGGCTACCGTACACTTCCGCTTCATCAAGACCCCAGAGTACCTGCACACAGACCAGAGGCTCGTCTTCAGAGAGGGAAGAACCAAAGCTGTGGGCACCATCACTAAGTTACTCCTGTCAACAAATAATCAGCCATCAAACTCCAAACCTCCTCAAATTAAGATGCAGTCAACAAAGAAAACCCCGGCTAGAAGAGAGGATGGAGGAGCCCCGTCCAGTGAGGAGGCCGTAAGCACAGCACCGCCTGCCGCTCAGAACACACCACAACAGCCAAAGTCTGGAGGCAGAAGACGAGGAGGTCAGCGGCACAAAGGCAAACCTCAGAGCAACTCCACAGTGACCCTTGCCGGTGCCGTCGGTGGATGTTAAACTCAAGAGTCCAGTTggccatctatccatccatccatcttttactCATGCCTTTTAGCAACCCACACGGACCACAGCACTCCAGTGACCAGGCTCAACCGTTCACAGAACCAGCACACGCACGCCCTTTTTAtcaattttaacttattttaagacGTGCGTGTGTCCGTAGACTGTATATACCGTAGATATTGAGACTATAGGACCGATTTACTGCATGGTGGCTCTGTTTTGGCTGTAAATGTCGACTTGAAGGATAAACTTTACGTCCGTTTCTTCTTGCTGAACACATCATATACTTGCTCAACTGTTATTTTTGAAGGTAATTTCATTGGAATGATGTAAAACTCATGTAGCTGTTTTAAAGGGATTATTAACAAGCCTCGTCACTCAACCGCTTTTCATTGGAGCTAGTGTTTTCATTGTGGACCATGATGATTAGAGCTGGACCGTTTCACATGCTTTTGCTAGGTTTTTATGAGCTGAAGCTAATGGGACACTGATTGTGAAGTTTGTTGGCAGCTAGTTTTGTGTGAAATGAGAAttggcaattaaaaaaaaactttatctaATTAAACTATTAATGCTAATTACAATATATTTAGAGCTCCTCAAATCTTTGTTTAAGCTGAGACATTTACTCAAGTGTGCCTGATACACTTGGCTCAAGTTCTGCCAATAtatttaacagttttaataagATATTTCAAATTCAACCATTTGTTCACAGTTTTCTTTCCCCTAATTGTTCATAATGGGGAACCTTTTCAAAATAGTGCCAGCTGTTTTTGAATTAGGAAATAAAATGAGATGAACGGCCTCCAGAACATGTGCTGTAAATCGTTTCAGATGGTTTAGCTGCTCTACCAAGTACTTTAGTATTTGCTCCTTTCAGGATATTTGATCAGCTGGACCATTCTCTGCATTTACATGTCGTGAAACTCACTTTCCACAaacaatatacaaataaacagatGTTGAGAATTTCA

Function

symbol description
gtpbp1 Predicted to enable translation elongation factor activity. Predicted to be involved in translational elongation. Is expressed in intermediate cell mass of mesoderm; intermediate mesoderm; lens; solid lens vesicle; and ventral mesoderm. Orthologous to human GTPBP1 (GTP binding protein 1).

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis
ko03016 Transfer RNA biogenesis
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-030909-12 Predicted to enable translation elongation factor activity. Predicted to be involved in translational elongation. Is expressed in intermediate cell mass of mesoderm; intermediate mesoderm; lens; solid lens vesicle; and ventral mesoderm. Orthologous to human GTPBP1 (GTP binding protein 1).

Ensembl:

ensembl_id ENSDARG00000053467

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050307 True 3219 mRNA 0.46 12 33440615 33459764

Neighbor

gene id symbol gene type direction distance location
XLOC_025513 CABZ01012962.1 coding upstream 20951 33384282 ~ 33419664 (+)
XLOC_025514 CR396582.1 coding upstream 32905 33407588 ~ 33407710 (+)
XLOC_025512 mpp2a coding upstream 61175 33345347 ~ 33379440 (+)
XLOC_025511 pyya coding upstream 95835 33340939 ~ 33344780 (+)
XLOC_025510 hspb9 coding upstream 139294 33300522 ~ 33301321 (+)
XLOC_025517 NA coding downstream 100328 33560092 ~ 33573516 (+)
XLOC_025518 nacc1a coding downstream 285250 33745014 ~ 33754115 (+)
XLOC_025519 ier2a coding downstream 301785 33761549 ~ 33762726 (+)
XLOC_025520 alkbh7 coding downstream 458746 33918510 ~ 33922150 (+)
XLOC_025521 BX649502.3 coding downstream 618436 34078200 ~ 34079170 (+)
XLOC_025429 BX649540.1 misc upstream 3191579 30248739 ~ 30249036 (+)
XLOC_025509 NA non-coding upstream 245900 33193368 ~ 33194715 (+)
XLOC_025508 CR392003.1 non-coding upstream 392225 33045883 ~ 33048390 (+)
XLOC_025507 NA non-coding upstream 395593 33043644 ~ 33045022 (+)
XLOC_025522 NA non-coding downstream 647438 34107202 ~ 34113701 (+)
XLOC_025525 NA non-coding downstream 680599 34140363 ~ 34147094 (+)
XLOC_025527 BX649502.1 non-coding downstream 699111 34158875 ~ 34159072 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_04612170_04623197 GTPBP1, GTPBP1L, GTPB1 coding CI01000069 null 4612170 ~ 4623451 (+)
bowfin (Amia calva) AMCG00014894 gtpbp1,gtpb1,LOC106606809,LOC106601690 coding CM030128.1 CM030128.1 38600421 ~ 38629200 (-)