G636571 (LOC106583344)


Basic Information

Item Value
gene id G636571
gene name LOC106583344
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 65209760 ~ 65236881 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU723576
ctctgaatatatatatgtatgtaccaCATTACAAAAACTCACAAATATAAAGTATTTATGTTATAAGTATACACACGTCACAAACAAACATAGAACATTTTTGTATAAATCTGTATACTGTGTTAGAACGCTGAAGTGCTCTTAGCTGCTCgtccttttgtcacatttcactGTGTAATGACTTAAGAAATCACTTGAAGTTCATTTCaagaacaaaataaaaataactacATTTTATAAAACTGCACACACTCCTCCTGAAGGAGTGTGTGTAAGGCAACCCTTACATTAGCAGATGTTTATAGAATCACACAGTTAAGGATAAGGATAGTAAGCTATAGAGCATTAAGGGATACGTTTGAGTGGATCCATGTTACAGCTATAGTGTGAAACTTAATACTCTCCCACATTCAAAAAATGAAATGTATTCTATGATTTTTATCCCTAGACTATTCTTAGGCTATTCCAAACCATGAGATTCCTAACCTCCGTTTTCAAGTAACTCTTGGTATGCACATTTTAATTTCAGCCAATCAAACTTCACCAAGTCTGTTCTAATGTTTTGTCATCTGGTTGTTGCCGACATCAAATGAATAGATTTACAGAGTTTCTATCAGTGAGATGGTTGAAATGAAAACCTGAATACACAGGAGGTCTTCAACTTTTTTAAAGGCACTTTTTAAACATTGTAATTCTGCTGGCATTTTTCTCTTTTTAAGGACTCATTCCTATAAAGTTCTAAGGGGAAAAAAATTGTTTCAGTGATATGATTCTCTTGCCATTACAAAACCGCAATACTTGTTGCATTGTGGCATGAGTAAAACTTATGACACCTtttaaaaggtccaatgcagccatttttatctcaatatcaaataatttctgggttaCAATTAAGTAAGTACCCTACTGTGATATTTTTCAATTACaatgttaaaataag
>TU723574
ctctgaatatatatatgtatgtaccaCATTACAAAAACTCACAAATATAAAGTATTTATGTTATAAGTATACACACGTCACAAACAAACATAGAACATTTTTGTATAAATCTGTATACTGTGTTAGAACGCTGAAGTGCTCTTAGCTGCTCgtccttttgtcacatttcactGTGTAATGACTTAAGAAATCACTTGAAGTTCATTTCaagaacaaaataaaaataactacATTTTATAAAACTGCACACACTCCTCCTGAAGGAGTGTGTGTAAGGCAACCCTTACATTAGCAGATGTTTATAGAATCACACAGTTAAGGATAAGGATAGTAAGCTATAGAGCATTAAGGGATACGTTTGAGTGGATCCATGTTACAGCTATAGTGTGAAACTTAATACTCTCCCACATTCAAAAAATGAAATGTATTCTATGATTTTTATCCCTAGACTATTCTTAGGCTATTCCAAACCATGAGATTCCTAACCTCCGTTTTCAAGTAACTCTTGGTATGCACATTTTAATTTCAGCCAATCAAACTTCACCAAGTCTGTTCTAATGTTTTGTCATCTGGTTGTTGCCGACATCAAATGAATAGATTTACAGAGTTTCTATCAGTGAGATGGTTGAAAGTCTTCAACTTTTTTAAAGGCACTTTTTAAACATTGTAATTCTGCTGGCATTTTTCTCTTTTTAAGGACTCATTCCTATAAAGTTCTAAGGGGAAAAAAATTGTTTCAGTGATATGATTCTCTTGCCATTACAAAACCGCAATACTTGTTGCATTGTGGCATGAGTAAAACTTATGACACCTtttaaaaggtccaatgcagccatttttatctcaatatcaaataatttctgggttaCAATTAAGTAAGTACCCTACTGTGATATTTTTCAATTACaatggtaaaaaaataaacaaaaatagcttcttagcaaaaagcaatttctcaagcaagaattttgggTAGGGAgggaaaaactgaaaactagctgttattggcagaaaggtttagaactctctttcttattggtctattaactaatttaccacctggcaatgtcaccaggcaggccaaaactccacccCACCAAAACAAGATGAAATTTCAGGCAGCTCTTACActgaaagggcattatcataattttaacaatttcacagtattattccatcctcatagtgtgaaaatataaatataaacacaggaaaatcacatttttgactgcactgggcctgtaAAGTACATTAAGGCTTTGTGGTTGATGAGCTGTAAATGTCACAACAATAGCCAGCTGTCACTGCAGACAGATAGACAGCTACCCTTTGGTCCGACCTTCTATAGGTGTAAATGTGTGGTATCAGGACTACAAatggctattattattattattattattattattatggtttCACTGAAAATACTCACTTTGAAATGTAGGACGCAACAGTTGTCTTTGAGAAAGGCTAGTGGACTGGAGACTCCAGCGTTTGACACTGTTGGCCTCCCTATGTGTCAACTTTGAACAGCTACTAAATTAAGTTGTGTTGGGATTTGGAAAATCAATAGGATTTTTGAGAACTTAGGTTTAAGTGGGTGTTCAGGTGTGAACATGCCTGCTTTTTCCCCTCAGAGCTGTACATACACACCAATTGTCTCTCAATATTTTGTAGCGTGCaaaaacacaaacatacacattttTTTGCATAGCGATAAAGCCACTCTACAAAGTCACACTTACAAAAGAGACCAACAACTAGAAATGTTATCTcatgtcttcctctctcttgttGAATGCATTGTCCAGGATAATTCCACAGATTGGAAAATAAACATCCAATTCTGTCACCCACAGGTTTTTGTTATTAAACTAAATGTGAGAAAAATACAGTCTAAGTCCTCACTTTTAGACACTGGACCAGAGGCAGAATCAGACACTTTTCATCAAGTCAGTGCACTGGAAGGGGAGATGCCACTTCAGTGGGGGGGGTCCTATAAGTCCCAAATGTAATGGACACAGACAACGGCCCCCTATTCACCTCCTCAGTTTATCATATTTTTGTCCCCTCAGCATCATCACTTAATCATCCCTCTTCATCTTTTTGTCTGTCTTTTCAGAAAGGTAAGGTATCCATGAAGATTTTGTCTACGATGGGTGGTGGAGGGACCAAGTCCTCCAGCTTCAGGTAGAAGATGCGCTGCAGGCCTTGGGTGCAGAGGGTGCGCAGCTCGGGGAGCTTCCCTAGCAGACGGGACAGGAAGTTGGGCTGGGGCCGCCCTGCGTCGGAGCCACTGCCGGCCACGTGGTCCCTCAGACAGGTTATGAGGCGGTTCTGGAACTCCTCCACCCGTTTGGGCTCTTTAAGGCCATG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU723576 False 943 lncRNA 0.33 2 65209760 65236881
TU723574 True 2376 TUCP 0.39 2 65234484 65236881

Neighbor

gene id symbol gene type direction distance location
LOC110528257 LOC106583347 coding downstream 45048 65161964 ~ 65164712 (-)
LOC110528252 LOC106565416 coding downstream 163241 64987665 ~ 65046519 (-)
LOC110527139 LOC106583244 coding downstream 229289 64978825 ~ 64980471 (-)
LOC110528251 LOC106583255 coding downstream 267108 64927583 ~ 64942652 (-)
LOC110528998 rnpep coding downstream 281854 64917071 ~ 64927906 (-)
LOC110528260 LOC106583339 coding upstream 43472 65277524 ~ 65288560 (-)
LOC110528263 LOC106583335 coding upstream 71367 65308248 ~ 65323307 (-)
LOC110528264 pol3 coding upstream 88259 65325140 ~ 65327096 (-)
LOC110528265 LOC106583334 coding upstream 100317 65337198 ~ 65342766 (-)
LOC100136780 ssr1 coding upstream 107141 65344022 ~ 65347268 (-)
G636567 NA non-coding downstream 9626 65199935 ~ 65200134 (-)
G636560 NA non-coding downstream 19796 65189731 ~ 65189964 (-)
G636557 NA non-coding downstream 24776 65184663 ~ 65184984 (-)
G636471 NA non-coding downstream 49636 65159714 ~ 65160124 (-)
G636472 NA non-coding downstream 56464 65151090 ~ 65153296 (-)
G636594 NA non-coding upstream 91513 65328394 ~ 65329081 (-)
G636601 NA non-coding upstream 93050 65329931 ~ 65330208 (-)
G636592 NA non-coding upstream 93682 65330563 ~ 65335609 (-)
G636533 LOC106583345 other downstream 73965 65135538 ~ 65135795 (-)
G636532 LOC106583345 other downstream 75015 65134250 ~ 65134745 (-)
LOC110528239 LOC106583268 other downstream 537744 64669731 ~ 64689634 (-)
LOC110528235 LOC106583273 other downstream 685579 64521769 ~ 64526166 (-)
G636055 LOC100380681 other downstream 883530 64318194 ~ 64326230 (-)
G636719 NA other upstream 256909 65493790 ~ 65495157 (-)
G637495 NA other upstream 644131 65881012 ~ 65882556 (-)
G637504 LOC106583318 other upstream 650055 65886936 ~ 65892402 (-)
G637669 NA other upstream 939079 66175960 ~ 66177895 (-)
G637722 NA other upstream 1039901 66276782 ~ 66277080 (-)

Expression

G636571(LOC106583344) Expression in all Baseline Samples

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G636571(LOC106583344) Expression in each Bioproject

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G636571(LOC106583344) Expression in each Sample
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Co-expression Network