XLOC_025518 (nacc1a)


Basic Information

Item Value
gene id XLOC_025518
gene name nacc1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33745014 ~ 33754115 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050309
ATGGCTCAGACCCTTCAGATGGCGATCCCGAACTTCGGCAACAATGTCCTGGAGTGTTTGAATGAGCAGCGGCTGCAGGGCCTGTACTGCGATGTGTCCGTGGTGGTGAAAGGCCACACCTTTAAAGCCCACCGCGCCGTGCTGGCGGCCAGCAGCTCCTACTTCCGTGACCTTTTCAACAGCAGTGCGGGCAGCAAAACCCCTACGGTGGTGGAGTTGCCCCCGGCTGTACAGCCGCAGAGCTTTCAGCAGATCCTGGCCTTCTGCTACACCGGACGCCTCAGCATGAACGTCGGAGACCAATTCCTCCTAATGTACACGGCTGGTTTCCTCCAGATCCAGCAGATCATGGAGAAGGGCACAGAGTTCTTCTTGAAGGTCAGCTCACCCAGCTGTGACTCACAGGGCCTCCATACTGAAGAAACCCCCCCTTCAGAGCCTCAGAGCCCAGTTACCCAGACTGCTGCAGGGGCTGCAGCAAATGGTGGCGCTGGGGTGGTGGCTACGGCGGCCAGTCGGCCAGCTTCCTGCTTGACCCCATTGCCTCTGGTGTCTCGAGTGAAGACGGAGCAGCCGGAGACTTCACCCTATTCAGTGGTGTGCACACCGGTGGCCAAGCGGCTCTGGGAAGGAAGCAATCGGGAAGGCAGTGGAGGCTTAGGAGCTGCCGGTGGAGGAGGAATGAGGAAGGCAGCTCGTTTTTCCCAAGAGATGGCACGTGGAAGTGCCATTCAGCAGCAAGGTAGCCATGGTGCAGGCAGTGGCAGCACCAATGGCAATGGAACAAGCAGTGCCACCCCTGAAGGCACCAGCCCTGGTACTTTGAGTGCCTATGCCAGTGATTCGCCCATATCTTACCATGATGACGAGGAAGAGGAGGAAGCAGTGGATGATGGCACTGAAGAGCAGTACAGGCAGATCTGCAACATGTACACCATGTACAGCATGCTCAACGTGGGCGCTACAGCAGGAGAGCGTGTGGAGGCCCTCCCAGACCACTCAGAGACACGGCCCAGGATGCGTGGCCGCCAGGATCTTGCCTCTCTCCCTGCCGAGCTCATCGCTCAGATTGGCAACCGCTGTCATCCCAAACTTTATGAGGAAGGTGACCCTGCAGAGAAACTGGAGCTCGTTTCAGGCACCAGCGTGTACATCTCTCGAGCTCAGCTGATGAACTGTCACGTCAGTGCTGGGACAAGACACAAAGTCCTTCTGAGGAGGCTGCTGGCTGCTTTTTTCGACAGGAGCACGCTGGCCAACAGTTGTGGAACTGGCATCCGTTCCTCCACCAATGACCCCAGCCGTAAGCCGCTGGACAGCCGAGTGTTGCACGCAGTCAAGTTTTACTGCCAGAACTTTGCCACCAGCTTTAAGGAGAGCGAGATGAACGCCATCGCGGCGGATATGTGCACTAATGCTCGGCGCGTGGTGAGGAAGAGCTGGATCCCCAAGCTCAAGCTACTGATGGCGGAGGGAGATGCCTACGCCAGTTTCCTCCCCGACAGCAACAAGATGGAAGCGGACGGCCTCAGCGGCGAGCCCACCTTCGAGACTGCAAGCCTGGAGGGCGGCGCTTCCGTGGAGACCGGAGGATCCTCGGGCGAGTCTCTGCAAGGTGTGGGCGGAGACAACGGCACTTTGTTTCAGTGA

Function

symbol description
nacc1a Is expressed in epiblast; hypoblast; and notochord. Orthologous to human NACC1 (nucleus accumbens associated 1).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-010319-3 Is expressed in epiblast; hypoblast; and notochord. Orthologous to human NACC1 (nucleus accumbens associated 1).

Ensembl:

ensembl_id ENSDARG00000099164

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050309 True 1650 mRNA 0.58 6 33745014 33754115

Neighbor

gene id symbol gene type direction distance location
XLOC_025517 NA coding upstream 171498 33560092 ~ 33573516 (+)
XLOC_025515 gtpbp1 coding upstream 285250 33440615 ~ 33459764 (+)
XLOC_025516 CR396582.2 coding upstream 294795 33450100 ~ 33450219 (+)
XLOC_025513 CABZ01012962.1 coding upstream 325350 33384282 ~ 33419664 (+)
XLOC_025514 CR396582.1 coding upstream 337304 33407588 ~ 33407710 (+)
XLOC_025519 ier2a coding downstream 7434 33761549 ~ 33762726 (+)
XLOC_025520 alkbh7 coding downstream 164395 33918510 ~ 33922150 (+)
XLOC_025521 BX649502.3 coding downstream 324085 34078200 ~ 34079170 (+)
XLOC_025522 NA coding downstream 353087 34107202 ~ 34113701 (+)
XLOC_025523 si:dkey-204f11.3 coding downstream 357842 34111957 ~ 34112677 (+)
XLOC_025429 BX649540.1 misc upstream 3495978 30248739 ~ 30249036 (+)
XLOC_025509 NA non-coding upstream 550299 33193368 ~ 33194715 (+)
XLOC_025525 NA non-coding downstream 386248 34140363 ~ 34147094 (+)
XLOC_025527 BX649502.1 non-coding downstream 404760 34158875 ~ 34159072 (+)
XLOC_025529 dre-mir-181c non-coding downstream 443579 34197694 ~ 34197771 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_04776672_04785162 NA coding CI01000069 null 4775370 ~ 4785432 (+)