XLOC_025519 (ier2a)


Basic Information

Item Value
gene id XLOC_025519
gene name ier2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33761549 ~ 33762726 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050310
GGTTTACTTCAGTGAATGAAACCACGGTGAAAGTAAACTGAGCTCATACAAATACATCTGCACATTATTTGTGTGCTTAAGAGTGCATTGAACAATGGATGTCACAGCAGAGGCCAAGCAGATAATGGTCCAGGCTTTGGGTAAAATGTACAGCTCGCGCAGCCAGCGTGGCGGACTTCGGCTCCACCGGAGCCTGTTGCTGACGCTCGTCATGAAATCTGCAAGGGACATTTACCACTCAGCCCGACTGATGAGCGAGAAAAGCGGACAATCTGTCACAGAGGAGAGCACATCACACACTCAGGAGCCCATGGACACATCGAGCTCCACGGCGACACCTTTGCGCGAGACATCGGGGCAGTCCAGCGAGGATGGGCAAAGGTCCGGACTCGAGGGTCATCCGCATCCACTCAACCCCGCGGCGGACAAAGAAAACTGCAGCCCATCCAGACCGGACCGTCACTCCAGAAAGCGACGAAGCAAAACAGCCACGGATTCAGACTTCATCCCATGCAAAAAAGCCAAACTGGAGTGCGCGGAGGTCAGGGGGGTTCTTCAAAACAGTTCCGCTAACTGCGGCAGGGCGCTGGACTCGCTGTCACTCGTGCCAATGCCAAGGACAATTGTCACTTTTTGAAGAGACAAACAACAGAAGCCCTTCAGTTGTCAAGTGAACTTTGCGCACCACTGGAAGCGGATTGTGGCGCAGAACTGCCACCGGGCAGTGTTAAGGGCACTTGAGAAGCCAGTGGGTAGTTTTACTCACAGTGGAACAATGTGACAGCCGGTTACTCATACAGTAGGAGAGTATTGGGTTGTTGTGGACATTCTGACTAATGGTGCTTGTTCAGCCCGTCATTTTTCTCTGAGTCAGGATATGACGCGGTACTTCGACGAGAAGTGTGACTGGGAAAACCACCGCGGACATTTAcatgaactttatttatttattggtcagGAATTTGGATTGTCAGTCCAGTCGTTACACTGACTGACTCACTTGCTGAAGAATCCACATAAAACCATTGTGGAAGACTTGATCTGGTTTGTTAATGGCCAGGATAGTCAATCTGTGGATATTCGTGCAGGTCAACGTGAAATAAGCTATACAACAAACATCTTGATGTTATGATTAAGTCTATCTACCTCACTTTTGTACAATAAAGATGTTTAAACAT

Function

symbol description
ier2a Acts upstream of or within several processes, including Kupffer's vesicle development; cilium assembly; and convergent extension. Located in nucleus. Is expressed in several structures, including axial chorda mesoderm; forebrain neural rod; midbrain hindbrain boundary; otic placode; and tail bud. Orthologous to human IER2 (immediate early response 2).

GO:

id name namespace
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0060271 cilium assembly biological_process
GO:0060026 convergent extension biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9126 Acts upstream of or within several processes, including Kupffer's vesicle development; cilium assembly; and convergent extension. Located in nucleus. Is expressed in several structures, including axial chorda mesoderm; forebrain neural rod; midbrain hindbrain boundary; otic placode; and tail bud. Orthologous to human IER2 (immediate early response 2).

Ensembl:

ensembl_id ENSDARG00000099195

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050310 True 1178 mRNA 0.49 1 33761549 33762726

Neighbor

gene id symbol gene type direction distance location
XLOC_025518 nacc1a coding upstream 7434 33745014 ~ 33754115 (+)
XLOC_025517 NA coding upstream 188033 33560092 ~ 33573516 (+)
XLOC_025515 gtpbp1 coding upstream 301785 33440615 ~ 33459764 (+)
XLOC_025516 CR396582.2 coding upstream 311330 33450100 ~ 33450219 (+)
XLOC_025513 CABZ01012962.1 coding upstream 341885 33384282 ~ 33419664 (+)
XLOC_025520 alkbh7 coding downstream 155784 33918510 ~ 33922150 (+)
XLOC_025521 BX649502.3 coding downstream 315474 34078200 ~ 34079170 (+)
XLOC_025522 NA coding downstream 344476 34107202 ~ 34113701 (+)
XLOC_025523 si:dkey-204f11.3 coding downstream 349231 34111957 ~ 34112677 (+)
XLOC_025524 aldh3b1 coding downstream 357465 34120191 ~ 34128952 (+)
XLOC_025429 BX649540.1 misc upstream 3512513 30248739 ~ 30249036 (+)
XLOC_025514 CR396582.1 non-coding upstream 353839 33407588 ~ 33407710 (+)
XLOC_025509 NA non-coding upstream 566834 33193368 ~ 33194715 (+)
XLOC_025525 NA non-coding downstream 377637 34140363 ~ 34147094 (+)
XLOC_025527 BX649502.1 non-coding downstream 396149 34158875 ~ 34159072 (+)
XLOC_025529 dre-mir-181c non-coding downstream 434968 34197694 ~ 34197771 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location