XLOC_002552 (si:ch211-281k19.2)


Basic Information

Item Value
gene id XLOC_002552
gene name si:ch211-281k19.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5852359 ~ 5855125 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004754
GGTGGGTCTTTTTGAAGTGAAAGacctgattggagaaggaagttATGGCAAGGTGTATCTGGGATCTCACGTATTTAATGAGAGAACAAAGGTTGCCCTGAAGTACATCAAGAAGCGTAAACAGGACCGCTATCTCGACGTTgatGGTCATTCCAAACCTGTGCTTGCAGAAGTGGCAATCATGCTTAAGTTGATGAAGGACCCACCTTGCCCCAGCATCATCACATTACACCACTGGATTAAGAATAAGAACGACTTCGTTCTCTTTCTGGAGTACGCCGAGTCATCCCAGAACTTGGCTTATTACGTCAGAAGTACATTGGACATTGATGAAACCCACGCACGCCGGTTAATGTGTCAGTTGATCCAAGCTGTCAAGTTCTGCGCTGAGCGTGGAGTTTTCCATGGAGATATGCACTCGGGGAACATCCTGGTGACTCAACCCCGATCAGAGCTCAAACTGATTGACTTTGGTTGTGCTCGGCTAATTACCAGCGAGCCTTTCAACAGCAGTGATTATCGAGGAGCCTTACTTTACACACCGCCTGAGGTTCTGAGGGATCCCACATTCTTTCCTAACCCGGCGTACGTCTGGACATTAGGCCTCATCCTGTATGAAATATTGCATGGACAATTGGCCTTTTTCGACACGCATTCGATAATCGTTGGAGACCTCCAGACAGACCTCACCTTATCTTTAGATTGCCTGGACCtgatttcccagtgtttggtCCGCAATCCAGAGAAGCGACTGCAGTTACATCAGTTAGAAGAGCACCGGTGGTTCAATCCAACGAGCCCAAATCCTGTGCAGCAGTGAGACAAGAGGAGaaaacaCTAAAGAAGCGAAGAGGAGAACAGCAGCATTTCCAGaaatttcacaagactgttaaagttattaattactccctcatgtcattccaaacccctcaGACCTTACTTTTCAGTGTCAGTGTGTTGATGAGAGCTCTGtcctgcactgtgtgtgtgtccactgctgacgtttacctcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttaaacgtcagcagtgcgacacacatCCAGTGCAGTACAGGACTTctgaagtcattatttttgttttaatatttttgtgtttttctttctgcatTAAAGAAGTTTAATACTCCAAACCCCTGACACCTTTCCTCATCTTCaggaaacaaatgaaaacatttgagatgaaatcaaatcatcaaaccatgagagctctgtcctgcactgtgtgtgtgtccactgctgacgtttacctcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttaaacgtcagcagtgcgacacGCATACAGTGCACTGCGCTCTTCTGGACGTGCGGtttgagggtcagagagctcttagatttcatctcaaatgttttaatttgtgttcttAATATGAACTAAACATGAATTTGAACTAAGGACATgaggtgagtaattaatgacaataatggtGATTAaatactgcagctctgcacaagacctttggccacaggagaaatggtcgtgcccaaccgagcctggtttctctcgaggttttttccttcacttttgtcaattagtgaagttttgttcctcgccactgtcgccgctggcttgcttggttgggacttgtggagctgcgcatcgatggatttgctcttcagtgaactgaactttaactccaGTGCTGTCACAGTTTTCTCCTCTAAAGTGTCATCAAAGATCTGCTCGACTATTTTCTCCCTCATTAATGAATCTGGTGTTTTGTCATAAGAGAGACTGATTGTTTTATAATGAAGTGTTCATGATTGTTTTGTAATGAATTGTTCTTTGAATTGTTTTGTGATGAACTGCTTTTATGTATTGTTGGCtaataagtcaaataaaatcCTGTGAATCAAA
>TCONS_00005990
TCTGAGTCCGAGTCCGAGTCCGAGTCAGAGTCAGTTCTTGAGGAGCCTAATGAGGCTTCTGGGCTGACTCTTGGTAAGTGATCAtttccttttattattataaattagtaaTCAGTTTACTCCTGCAATTCTGATGGAAGTTTCTGCTTTCAGCTCATTGCATTAGATCCAGATTTAAAGGATTCGAGTCATTTATTTGATCCGTTTCATACCAGACAATGCAAGTAAATCTCCCTgctgtttttctgtgtttcaggatcTAGGGTGGGTCTTTTTGAAGTGAAAGacctgattggagaaggaagttATGGCAAGGTGTATCTGGGATCTCACGTATTTAATGAGAGAACAAAGGTAGAGAACTATTTTTCAAATTCAGTCAACATTTTCCTCCTGATTACTCAATATAAATCATTTGTGggctttaatttcatttgttgttgtttttccgcAGGTTGCCCTGAAGTACATCAAGAAGCGTAAACAGGACCG

Function

symbol description
si:ch211-281k19.2 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098133

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004754 False 1952 mRNA 0.44 6 5852359 5854862
TCONS_00005990 True 492 lncRNA 0.39 1 5854634 5855125

Neighbor

gene id symbol gene type direction distance location
XLOC_002551 ankrd55 coding downstream 4455 5823759 ~ 5847904 (-)
XLOC_002550 NA coding downstream 30775 5788620 ~ 5821584 (-)
XLOC_002549 st8sia4 coding downstream 168033 5667401 ~ 5684326 (-)
XLOC_002548 syk coding downstream 270872 5533843 ~ 5581487 (-)
XLOC_002547 CU466285.1 coding downstream 324995 5525393 ~ 5527364 (-)
XLOC_002553 si:ch211-281k19.2 coding upstream 134 5855259 ~ 5857548 (-)
XLOC_002554 CABZ01032180.1 coding upstream 95338 5950463 ~ 5950578 (-)
XLOC_002555 NA coding upstream 181756 6036881 ~ 6037746 (-)
XLOC_002556 NA coding upstream 534144 6389269 ~ 6409797 (-)
XLOC_002557 ca9 coding upstream 562231 6417356 ~ 6454386 (-)
XLOC_002546 NA non-coding downstream 628417 5221915 ~ 5223942 (-)
XLOC_002540 NA non-coding downstream 930308 4919323 ~ 4922051 (-)
XLOC_002539 NA non-coding downstream 1033753 4812304 ~ 4818606 (-)
XLOC_002558 BX005434.1 non-coding upstream 617581 6472706 ~ 6472832 (-)
XLOC_002561 NA non-coding upstream 755032 6610157 ~ 6611065 (-)

Expression


Co-expression Network