XLOC_025520 (alkbh7)


Basic Information

Item Value
gene id XLOC_025520
gene name alkbh7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33918510 ~ 33922150 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050311
AGCGAAATCAAAATGGCGGATTGCCAATGACAGTACTGACACTGGTACACAGAATATTGCGCGTATAGCCTATTTTATTCCCTCAACATATGGTCTCGACAACATGACACTACTAATTAGAGTATCCAGACAAATTCAGAGGAAATCTCTGCAAAATACCTCACTTTACAGGATTTTCTCGGAGAGTTCAGCTTTACGAAAAGGCCCCGAGTGTACAGATGAGTGTAAATGGTTGTGTGGATCGTCCGAAGAAATTTTGTCGGCAATGCGTGGACAGGTTGAAGTCAGACAGAACTTCATCAGCGAGGAAGAGGAGAACGCCCTGTTTAAAGAAGTAGAGGCAGGACTTAGGAAAAAGCGGTACGAATTTGACCACTGGGACGACGCCATCCACGGCTACAGGGAAACAGAGCGTCTGCAATGGGGAGCTGCGTCAGAAAACATCTTAAGGCGAGTAAGAACAGTCGCGTTTCCTGAAGGCAGTCCTCTGCTTGGGCCTGTTCATGTTCTGGACTTGGACAAAAAGGGCTACATCAAACCCCATATCGACAGTGTGAAGTTCTGTGGAAGCACCATTGCAGGGCTGAGCTTGTTGTCCGATAGTATAATGCGACTGGTCCCGGAAAACAATACCACAGATCGGGTGGATTTGCTTCTAAGTCGGCGCTCACTTTATATATTACgGGATGATGCACGATTTAAATTCACCCATGAAATCTTAAAAGATGAAGAGTCCTTTTTCTCTGGACAGAAGGTTCCACGTCATCGCCGCATCTCTGTGATATGCCGAAACCTGCCAATGTAAAACAACTGAGCCTGGACTGATCATAGCACCTGTCTTGAAAACCAAAGAGACCTCTGTTGATTCAATCTTCAGTCTGATGTATTTTTCCTTGAATAACCACAAAAAAGAGACTATGTGGGGGGAACTAAAGCCTCTGGAGAATTTATGAAGGGAAGAGATCAGATTCATGTAATTTATCATATAAATGGAGTATGAAAAAAGATGAGACCAGTCAACTGCTTCTATGTACAATGTCAATTTTTGTATTCATTATTAACGTTCCtcttaaataataaatcattattgcATAGAGGGcatcaaatttcaaataaaaaccaATAGGTATTTATTTCAAAACAGATATATCATACTACAAAGGGCAAGCGCCAGCAAAATATGGTaccttttacagtttttttttttaaatcagcacaATGTTAagccagttaaaaaaaaaatctattagaaCAAATGAGTGTGTAATAAAAGCCACATCTTCACA

Function

symbol description
alkbh7 Predicted to be involved in fatty acid metabolic process. Predicted to act upstream of or within cellular response to DNA damage stimulus and regulation of mitochondrial membrane permeability involved in programmed necrotic cell death. Predicted to be active in mitochondrial matrix. Orthologous to human ALKBH7 (alkB homolog 7).

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:1902445 regulation of mitochondrial membrane permeability involved in programmed necrotic cell death biological_process
GO:0005759 mitochondrial matrix cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-78 Predicted to be involved in fatty acid metabolic process. Predicted to act upstream of or within cellular response to DNA damage stimulus and regulation of mitochondrial membrane permeability involved in programmed necrotic cell death. Predicted to be active in mitochondrial matrix. Orthologous to human ALKBH7 (alkB homolog 7).

Ensembl:

ensembl_id ENSDARG00000037906

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050311 True 1286 mRNA 0.41 4 33918510 33922150

Neighbor

gene id symbol gene type direction distance location
XLOC_025519 ier2a coding upstream 155784 33761549 ~ 33762726 (+)
XLOC_025518 nacc1a coding upstream 164395 33745014 ~ 33754115 (+)
XLOC_025517 NA coding upstream 344994 33560092 ~ 33573516 (+)
XLOC_025515 gtpbp1 coding upstream 458746 33440615 ~ 33459764 (+)
XLOC_025516 CR396582.2 coding upstream 468291 33450100 ~ 33450219 (+)
XLOC_025521 BX649502.3 coding downstream 156050 34078200 ~ 34079170 (+)
XLOC_025522 NA coding downstream 185052 34107202 ~ 34113701 (+)
XLOC_025523 si:dkey-204f11.3 coding downstream 189807 34111957 ~ 34112677 (+)
XLOC_025524 aldh3b1 coding downstream 198041 34120191 ~ 34128952 (+)
XLOC_025525 NA coding downstream 218213 34140363 ~ 34147094 (+)
XLOC_025429 BX649540.1 misc upstream 3669474 30248739 ~ 30249036 (+)
XLOC_025513 CABZ01012962.1 non-coding upstream 498846 33384282 ~ 33419664 (+)
XLOC_025514 CR396582.1 non-coding upstream 510800 33407588 ~ 33407710 (+)
XLOC_025509 NA non-coding upstream 723795 33193368 ~ 33194715 (+)
XLOC_025527 BX649502.1 non-coding downstream 236725 34158875 ~ 34159072 (+)
XLOC_025529 dre-mir-181c non-coding downstream 275544 34197694 ~ 34197771 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_04917103_04918567 ALKBH7 coding CI01000069 null 4917103 ~ 4918901 (+)