XLOC_025521 (BX649502.3)


Basic Information

Item Value
gene id XLOC_025521
gene name BX649502.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34078200 ~ 34079170 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050312
ATGGATATTGAAGGCATATGTGAGATTCCCTGTCAGGACAGCTCAGCTGTTCAACTGGAAATGATTGACTTCTCAGAGTCCGATCATAGAAACGATTCACTTGAAATCATTGATAAGGGGCTAAACTGCAGTGAAACAAACTACATGTGCTGCTCTGTGTTCAACATCATTTTTTGCAACTGTTTATTTCTGGGACTTGCTGCTTTAATTTGTTCATTAAAGGCAAGAATCAAGATGGATGAGGGAGACATGGTGAAAGCACAGAAGTACAGCCGGTGGGCATGCAGAACCAACACAGTGGCCGTGATTGTCACCATTGTGGCACTAACTGTGTTTCTAGTAATATTTAGGGTTGTTATTTTCCATGATACACCAGCGGTTTACTCAGAACACTCTTATGGCACTTCTTTATCCTCTTTTGATTCATCTTTTGACAACATTAAATGGTCAAAATCAAAACCCAAGAATTATTATGCTCAAAACAAGCAGAATTCTTATTCAGACAAAAAGAGTTTTGGTAAACAGAAAGGGTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092135

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050312 True 534 unprocessed_pseudogene 0.39 2 34078200 34079170

Neighbor

gene id symbol gene type direction distance location
XLOC_025520 alkbh7 coding upstream 156050 33918510 ~ 33922150 (+)
XLOC_025519 ier2a coding upstream 315474 33761549 ~ 33762726 (+)
XLOC_025518 nacc1a coding upstream 324085 33745014 ~ 33754115 (+)
XLOC_025517 NA coding upstream 504684 33560092 ~ 33573516 (+)
XLOC_025515 gtpbp1 coding upstream 618436 33440615 ~ 33459764 (+)
XLOC_025522 NA coding downstream 28032 34107202 ~ 34113701 (+)
XLOC_025523 si:dkey-204f11.3 coding downstream 32787 34111957 ~ 34112677 (+)
XLOC_025524 aldh3b1 coding downstream 41021 34120191 ~ 34128952 (+)
XLOC_025525 NA coding downstream 61193 34140363 ~ 34147094 (+)
XLOC_025526 carm1 coding downstream 70167 34149337 ~ 34172214 (+)
XLOC_025429 BX649540.1 misc upstream 3829164 30248739 ~ 30249036 (+)
XLOC_025516 CR396582.2 non-coding upstream 627981 33450100 ~ 33450219 (+)
XLOC_025513 CABZ01012962.1 non-coding upstream 658536 33384282 ~ 33419664 (+)
XLOC_025514 CR396582.1 non-coding upstream 670490 33407588 ~ 33407710 (+)
XLOC_025509 NA non-coding upstream 883485 33193368 ~ 33194715 (+)
XLOC_025527 BX649502.1 non-coding downstream 79705 34158875 ~ 34159072 (+)
XLOC_025529 dre-mir-181c non-coding downstream 118524 34197694 ~ 34197771 (+)
XLOC_025530 NA non-coding downstream 131723 34210893 ~ 34217224 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01096261_00000800_00001464 NA coding CI01096261 null 752 ~ 1550 (+)