XLOC_025522


Basic Information

Item Value
gene id XLOC_025522
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34107202 ~ 34113701 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052732
CTTGCACAGTAATACACGGCTGAATCTTCTGTTGTCAGGCCTGATAGTTTCAGATATGTCATACTCTTTGAATTATCTCTGGTGATTTCAGCTCTTCCTTTAAAGGATTCAGCATAGTCATTGCCACTGCCATCACTATAAACACGTCCAATCCACACAAGAGGTTTTCCAGCTTGTTGTCTGATCCAGTGCATGCTACAGCAGTCAAAGCTGAACCCGGATCCTCTACAGGACAGAGTCAGAGTTTCTCCAGGCTTTTTCTGAACTGAGCTTTCAATCGAATCCATGCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052732 True 290 lncRNA 0.44 2 34107202 34113701

Neighbor

gene id symbol gene type direction distance location
XLOC_025521 BX649502.3 coding upstream 28032 34078200 ~ 34079170 (+)
XLOC_025520 alkbh7 coding upstream 185052 33918510 ~ 33922150 (+)
XLOC_025519 ier2a coding upstream 344476 33761549 ~ 33762726 (+)
XLOC_025518 nacc1a coding upstream 353087 33745014 ~ 33754115 (+)
XLOC_025517 NA coding upstream 533686 33560092 ~ 33573516 (+)
XLOC_025524 aldh3b1 coding downstream 6490 34120191 ~ 34128952 (+)
XLOC_025525 NA coding downstream 26662 34140363 ~ 34147094 (+)
XLOC_025526 carm1 coding downstream 35636 34149337 ~ 34172214 (+)
XLOC_025527 BX649502.1 coding downstream 45174 34158875 ~ 34159072 (+)
XLOC_025528 timm29 coding downstream 67134 34180835 ~ 34182587 (+)
XLOC_025429 BX649540.1 misc upstream 3858166 30248739 ~ 30249036 (+)
XLOC_025516 CR396582.2 non-coding upstream 656983 33450100 ~ 33450219 (+)
XLOC_025513 CABZ01012962.1 non-coding upstream 687538 33384282 ~ 33419664 (+)
XLOC_025514 CR396582.1 non-coding upstream 699492 33407588 ~ 33407710 (+)
XLOC_025529 dre-mir-181c non-coding downstream 83993 34197694 ~ 34197771 (+)
XLOC_025530 NA non-coding downstream 97192 34210893 ~ 34217224 (+)
XLOC_025533 NA non-coding downstream 135481 34249182 ~ 34250243 (+)

Expression


Co-expression Network