XLOC_025523 (si:dkey-204f11.3)


Basic Information

Item Value
gene id XLOC_025523
gene name si:dkey-204f11.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34111957 ~ 34112677 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050313
ATGGATTTTCAGATTGAAGCTCCAGAAATTGAAATTCCAGAAATTGAAGTTCCGGACGTGGAATTTTGTGAGGAAATGGACGTGGACTGTGAGATGGAGGCTGACAACGCAGAGGGCAATGAAGGGGGCATAGAAGTAGAATTTGAGATTAAAAAACGTCCTTGTCAAACACCTCGCAATCCAAACCAGAAAATCCAGCACAAAAGTCAAAGTCCTCGCAAAGTAAATGTAAAGGACTACTTGTGCTTCTCTGTGCTGAGCATCACCTTGTTCAACTCCCTGTTTCTGGGTACAGCTGCAATGTGTTTCTCCTTAAAGgcACTGAACAGAAAGTTGAAGAGAGATGTCAAAGGAGCAAAGAAATTCAGCTGTTTAGCTTTGGCTGCCAATATTTGTGCCGTCCTTGCCACTATCTCCACCATAATTGGTGTTGCTGTTGCCATTTCACTTACTCATTATGGTCACCATAAACGTGGTCAAtgttatgtcatttaa

Function

symbol description
si:dkey-204f11.3 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human IFITM10 (interferon induced transmembrane protein 10).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-190 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human IFITM10 (interferon induced transmembrane protein 10).

Ensembl:

ensembl_id ENSDARG00000092616

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050313 True 495 mRNA 0.42 2 34111957 34112677

Neighbor

gene id symbol gene type direction distance location
XLOC_025521 BX649502.3 coding upstream 32787 34078200 ~ 34079170 (+)
XLOC_025520 alkbh7 coding upstream 189807 33918510 ~ 33922150 (+)
XLOC_025519 ier2a coding upstream 349231 33761549 ~ 33762726 (+)
XLOC_025518 nacc1a coding upstream 357842 33745014 ~ 33754115 (+)
XLOC_025517 NA coding upstream 538441 33560092 ~ 33573516 (+)
XLOC_025524 aldh3b1 coding downstream 7514 34120191 ~ 34128952 (+)
XLOC_025525 NA coding downstream 27686 34140363 ~ 34147094 (+)
XLOC_025526 carm1 coding downstream 36660 34149337 ~ 34172214 (+)
XLOC_025527 BX649502.1 coding downstream 46198 34158875 ~ 34159072 (+)
XLOC_025528 timm29 coding downstream 68158 34180835 ~ 34182587 (+)
XLOC_025429 BX649540.1 misc upstream 3862921 30248739 ~ 30249036 (+)
XLOC_025516 CR396582.2 non-coding upstream 661738 33450100 ~ 33450219 (+)
XLOC_025513 CABZ01012962.1 non-coding upstream 692293 33384282 ~ 33419664 (+)
XLOC_025529 dre-mir-181c non-coding downstream 85017 34197694 ~ 34197771 (+)
XLOC_025530 NA non-coding downstream 98216 34210893 ~ 34217224 (+)
XLOC_025533 NA non-coding downstream 136505 34249182 ~ 34250243 (+)

Expression


Co-expression Network