XLOC_025524 (aldh3b1)


Basic Information

Item Value
gene id XLOC_025524
gene name aldh3b1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34120191 ~ 34128952 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050314
GGCTGCAGTATCTAACTAAGATGCTAAACTCGACAAACCTGAATCTTCTGAATGAAAGGCGAAAACCCGGAACTAATTTGCACGTGGTAAAGTGAAAAACACTGGGTTGTATCGGTAAAGTGGAGTTACTTTCTGGGAAAGCAAAGGTGTTTTCACAATGGAGGGCCAGAAGCAGGTGCTGGAGAGGCTGCGGGGTGCTTTCCGCTCAGGTGTGACCCTTCCTGTCCACTTCCGTTTGACTCAGCTGGAGGCTATGATGTCACTGTTTGAAGACAATGAAACACAGATTTTAGAGGCCCTTCATGAAGACCTTGCTAAGCCCAAATTTGAGACAGTGCTGTCAGAGATAGATATAGTGGTGAATGACATTTGCTACAACATCAGCAACCTGCAAACCTGGATGCAGCCCTCGTATGTGGGCACAAACTTGgcAACAAAGCTGGATGACTGCTTTGTGCGCAGGGAGCCATTGGGTGTTGTTTTGATTATTGGAGCATGGAACTATCCTATTCAGCTAATTTTGTCACCTTTGATTGGTGCAATTGCTGCAGGAAACTGTGCTATTCTGAAGCCATCAGAAATAAGTAAAGCGACAGAAAAACTTCTTGCTGAACTCATTCCTAAGTACCTGTCCCAGGAGTGTTATGCAGTCGTTTGTGGTGGAGCAGAAGAAACCAAGACATTGCTTGAGAACCGATTTGATCATATCTTCTACACGGGCTCGCAGTCTGTGGCTCGCTGTGTCCTGCAGGCCGCAGCAGTGCATCTCACCCCTGTTACTCTGGAATTGGGTGGAAAATGCCCTTGTTTGATATACGGCCGGCTGGACATGAAAGCTGCTGCCAAGAGGCTGGTGTGGGCCAAGTTTTTCAACTCTGGGCAGAGTTGTGTGGCTCCAGACTATGTTTTATGCACGGATGAGGTGAAAGAGATGCTGTTACCTTTCATGAAAGAGGCTCTGGAGAGCTTCTACGGATCTgagccccaagaaagccccgattaTGGCCGTATTGTTACAGACAGACACTGGAACCGACTGATTGAGCTAATGAAAAAGTCTGAGGGTAAAATAGTAATAGGAGGAGAGAGTGTCAAAGAGACCAGGTACATCGCTCCCACTGTGATCGTGGATGTAAAAGGAActgatgcattaatgcaggagGAGATTTTTGGCCCCATTCTACCCATTCTGACCATCAAGTCTCTTGACGAAGGAATCAATTTCATCAATGAGAAGGAAAAGGCTCTGGCACTCTACGCCTTTTCTGATGAGTCTCAGGTCGTCACTACAGTTCTTGAGAGGACCAGCAGTGGAGGCTTCTGTTCCAATGATGGAATCGTTCACATGACTCTTCCTGGTTTACCCTTTGGTGGAGTGGGTGCCAGTGGGATGGGCAACTATCATGGGCGTTGGGGTTTTGAGACGTTCAGTCATAAGCGTGGCTGTATGCTGAGAGGCTGGGGGCTGGAGCGCGTCAATGTGCTGCGTTACCCTCCCTATACTGAAAGCAATCTCAGCTGGCTGCGCTGGGCCACCACTGCCAAGAAAAAGGGCTGGGGAGGATGCTCTCTTATGTGAGAAATTAAAGATTTACACTTGCCCAGGGAACAAAAAAGCCTCCGTTTTACCAAGATTCATTTGTGGATTTTCAGTTATGCATCATGATTGAAAACTCCACCAGAGGTCAGCACTGAGAAAAGTGACTTCTTTAGGAAAACATTACTTCATCTTTAGTCACATCTTAGGATTTAGAAGTATCATCCAGGGACCAAAAATGAATCATCCATATTTGTTACCAAACACTACAGTTACAATGTACATTTACAGAAAGCATTATATCGGGGTACTAAATAATGTCCTTTGTTTTTTACTGTTACATATTTTGCAATGTAGTACATAATAGTTGATAAAATGTGTAGGATTCTAGCATTTGTaagttgtttaaataaatatgactacaaaaataaaatcttataaaTGTGTT
>TCONS_00050315
GTGAAAAACACTGGGTTGTATCGGTAAAGTGGAGTTACTTTCTGGGAAAGGTGTTTTCACAATGGAGGGCCAGAAGCAGGTGCTGGAGAGGCTGCGGGGTGCTTTCCGCTCAGGTGTGACCCTTCCTGTCCACTTCCGTTTGACTCAGCTGGAGGCTATGATGTCACTGTTTGAAGACAATGAAACACAGATTTTAGAGGCCCTTCATGAAGACCTTGCTAAGCCCAAATTTGAGACAGTGCTGTCAGAGATAGATATAGTGGTGAATGACATTTGCTACAACATCAGCAACCTGCAAACCTGGATGCAGCCCTCGTATGTGGGCACAAACTTGgcAACAAAGCTGGATGACTGCTTTGTGCGCAGGGAGCCATTGGGTGTTGTTTTGATTATTGGAGCATGGAACTATCCTATTCAGCTAATTTTGTCACCTTTGATTGGTGCAATTGCTGCAGGAAACTGTGCTATTCTGAAGCCATCAGAAATAAGTAAAGCGACAGAAAAACTTCTTGCTGAACTCATTCCTAAGTACCTGTCCCAGGAGTGTTATGCAGTCGTTTGTGGTGGAGCAGAAGAAACCAAGACATTGCTTGAGAACCGATTTGATCATATCTTCTACACGGGCTCGCAGTCTGTGGCTCGCTGTGTCCTGCAGGCCGCAGCAGTGCATCTCACCCCTGTTACTCTGGAATTGGGTGGAAAATGCCCTTGTTTGATATACGGCCGGCTGGACATGAAAGCTGCTGCCAAGAGGCTGGTGTGGGCCAAGTTTTTCAACTCTGGGCAGAGTTGTGTGGCTCCAGACTATGTTTTATGCACGGATGAGGTGAAAGAGATGCTGTTACCTTTCATGAAAGAGGCTCTGGAGAGCTTCTACGGATCTgagccccaagaaagccccgattaTGGCCGTATTGTTACAGACAGACAC
>TCONS_00050316
GTTTTCACAATGGAGGGCCAGAAGCAGGTGCTGGAGAGGCTGCGGGGTGCTTTCCGCTCAGGTGTGACCCTTCCTGTCCACTTCCGTTTGACTCAGCTGGAGGCTATGATGTCACTGTTTGAAGACAATGAAACACAGATTTTAGAGGCCCTTCATGAAGACCTTGCTAAGCCCAAATTTGAGACAGTGCTGTCAGAGATAGATATAGTGGTGAATGACATTTGCTACAACATCAGCAACCTGCAAACCTGGATGCAGCCCTCGTATGTGGGCACAAACTTGgcAACAAAGCTGGATGACTGCTTTGTGCGCAGGGAGCCATTGGGTGTTGTTTTGATTATTGGAGCATGGAACTATCCTATTCAGCTAATTTTGTCACCTTTGATTGGTGCAATTGCTGCAGGAAACTGTGCTATTCTGAAGCCATCAGAAATAAGTAAAGCGACAGAAAAACTTCTTGCTGAACTCATTCCTAAGTACCTGTCCCAGGAGTGTTATGCAGTCGTTTGTGGTGGAGCAGAAGAAACCAAGACATTGCTTGAGAACCGATTTGATCATATCTTCTACACGGGCTCGCAGTCTGTGGCTCGCTGTGTCCTGCAGGCCGCAGCAGTGCATCTCACCCCTGTTACTCTGGAATTGGGTGGAAAATGCCCTTGTTTGATATACGGCCGGCTGGACATGAAAGCTGCTGCCAAGAGGCTGGTGTGGGCCAAGTTTTTCAACTCTGGGCAGAGTTGTGTGGCTCCAGACTATGTTTTATGCACGGATGAGGTGAAAGAGATGCTGTTACCTTTCATGAAAGAGGCTCTGGAGAGCTTCTACGGATCTgagccccaagaaagccccgattaTGGCCGTATTGTTACAGACAGACACTGGAACCGACTGATTGAGCTAATGAAAAAGTCTGAGGGTAAAATAGTAATAGGAGGAGAGAGTGTCAAAGAGACCAGGTACATCGCTCCCACTGTGATCGTGGATGTAAAAGGAActgatgcattaatgcaggagGAGATTTTTGGCCCCATTCTACCCATTCTGACCATCAAGTCTCTTGACGAAGGAATCAATTTCATCAATGAGAAGGAAAAGGCTCTGGCACTCTACGCCTTTTCTGATGAGTCTCAGGTCGTCACTACAGTTCTTGAGAGGACCAGCAGTGGAGGCTTCTGTTCCAATGATGGAATCGTTCACATGACTCTTCCTGGTTTACCCTTTGGTGGAGTGGGTGCCAGTGGGATGGGCAACTATCATGGGCGTTGGGGTTTTGAGACGTTCAGTCATAAGCGTGGCTGTATGCTGAGAGGCTGGGGGCTGGAGCGCGTCAATGTGCTGCGTTACCCTCCCTATACTGAAAGCAATCTCAGCTGGCTGCGCTGGGCCACCACTGCCAAGAAAAAGGGCTGGGGAGGATGCTCTCTTATGTGAGAAATTAAAGATTTACACTTGCCCAGGGAACAAAAAAGCCTCCGTTTTACCAAGATTCATTTGTGGATTTTCAGTTATGCATCATGATTGAAAACTCCACCAGAGGTCAGCACTGAGAAAAGTGACTTCTTTAGGAAAACATTACTTCATCTTTAGTCACATCTTAGGATTTAGAAGTATCATCCAGGGACCAAAAATGAATCATCCATATTTGTTACCAAACACTACAGTTACAATGTACATTTACAGAAAGCATTATATCGGGGTACTAAATAATGTCCTTTGTTTTTTACTGTTACATATTTTGCAATGTAGTACATAATAGTTGATAAAATGTGTAGGATTCTAGCATTTGTaagttgtttaaataaatatgactacaaaaataaaatcttataaaTGTG

Function

symbol description
aldh3b1 Predicted to enable 3-chloroallyl aldehyde dehydrogenase activity. Predicted to act upstream of or within cellular aldehyde metabolic process. Is expressed in EVL; ectoderm; epidermis; peripheral olfactory organ; and pharynx. Orthologous to human ALDH3B1 (aldehyde dehydrogenase 3 family member B1).

GO:

id name namespace
GO:0006081 cellular aldehyde metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005575 cellular_component cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0004028 3-chloroallyl aldehyde dehydrogenase activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-021120-3 Predicted to enable 3-chloroallyl aldehyde dehydrogenase activity. Predicted to act upstream of or within cellular aldehyde metabolic process. Is expressed in EVL; ectoderm; epidermis; peripheral olfactory organ; and pharynx. Orthologous to human ALDH3B1 (aldehyde dehydrogenase 3 family member B1).

Ensembl:

ensembl_id ENSDARG00000013839

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050314 False 1985 mRNA 0.45 10 34120191 34128952
TCONS_00050315 False 931 mRNA 0.48 7 34120282 34123240
TCONS_00050316 True 1835 mRNA 0.45 9 34121156 34128950

Neighbor

gene id symbol gene type direction distance location
XLOC_025522 NA coding upstream 6490 34107202 ~ 34113701 (+)
XLOC_025523 si:dkey-204f11.3 coding upstream 7514 34111957 ~ 34112677 (+)
XLOC_025521 BX649502.3 coding upstream 41021 34078200 ~ 34079170 (+)
XLOC_025520 alkbh7 coding upstream 198041 33918510 ~ 33922150 (+)
XLOC_025519 ier2a coding upstream 357465 33761549 ~ 33762726 (+)
XLOC_025525 NA coding downstream 11411 34140363 ~ 34147094 (+)
XLOC_025526 carm1 coding downstream 20385 34149337 ~ 34172214 (+)
XLOC_025527 BX649502.1 coding downstream 29923 34158875 ~ 34159072 (+)
XLOC_025528 timm29 coding downstream 51883 34180835 ~ 34182587 (+)
XLOC_025529 dre-mir-181c coding downstream 68742 34197694 ~ 34197771 (+)
XLOC_025429 BX649540.1 misc upstream 3871155 30248739 ~ 30249036 (+)
XLOC_025517 NA non-coding upstream 546675 33560092 ~ 33573516 (+)
XLOC_025516 CR396582.2 non-coding upstream 669972 33450100 ~ 33450219 (+)
XLOC_025513 CABZ01012962.1 non-coding upstream 700527 33384282 ~ 33419664 (+)
XLOC_025530 NA non-coding downstream 81941 34210893 ~ 34217224 (+)
XLOC_025533 NA non-coding downstream 120230 34249182 ~ 34250243 (+)

Expression


Co-expression Network