XLOC_025525


Basic Information

Item Value
gene id XLOC_025525
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34140363 ~ 34147094 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050317
GTTAGTTATTTACGACTATAGCTTGTTAATGGGTGAGAAATCCTCGTCGTGTCAGCAGGTGTCCTCATTCTCCGTCATTCACTACTGTTCGCAGAAAGGGGCGCAATAGAGTCAACAGAATCTCAGTCTCTGCCCACATCAGACTCGTCCTGACGGCACTGCAAACTTTGGCTGATCTGCTGCGAGAGTCATGTCGAATAACAGCACGAGTGGTTTGTCGAGCTTGCAAAAAAGCGTCAATCAACTGCGATTTGAAGCATCATTTGACAGAATTATGGTTTCTCAAGCTGCAGACGATCTAAAAGCATTCTGCTTAAAAAATGCCAGTAAAGACCCTCTCATTAAAGGGGTGCCACCCAATGACAACCCCTTCCGACCCGCAAAATCATGTGTTCTCCTCTGAGGAGTCATGAAGAATGCTGAGAAACTTCTGAACATTGCAAGCATTTAAACCACCTTTCATCAGACCCCGAGCTGCATCATCGATATGACTACACTAAATTCTTTATCTTGGATAGCTGCATTCTCACGAGACGTTTTGATTGTTTAATAATGTGatttatgaagaaaaagtgtTTGATTGTTTTGTAATGTGGAACGGAGCTGTTTTGTGTGCACAACTTTAGATTACGATTAATTGCATTAACTACTAGAAGAATTTTCAAAAAGCTGAACTATTTGCCCTACAAAGCAGGGTGTGTCTGGtgccaataataattttaaaacatatgaaaACAAATACTGATTTTCAGTTTGTGCTGGGTAGATTACTTAAATATGATCTGTTTCTGATATGATATGAGCTCTAAATGATGTGAGAGTTCAAACATttttagtaggaaaaaaaaaaggaaaaactagtTTAAAAACTCTGGTGAGGAGTGTTGAAGCAATGACTTTCTGCGCCAATCACAGTCTGTAGCTGTAGCACACGAGCCTaatgaccagggccagacggaatctgcggacgttttttgctatttctgcagagaattttggtaaaattctgcggaattattttgggagtatccatcggagtatcataactaaaaccttaatatattaaataaaaagtaaaaaattactgaattaaaactgaataaattcagatttacacatttacttaagtaaataaacagaattaataatgggctaaaaatctgcagaaatctgcggaattctgcgcacgcagattccgtctggGCCTACTAATGACCagtcatttgtttttataaacatgCTTAACAGGAAATTGGCATTTAAGAAATTTTATTATCATGTGGTgtcaaaatcaataatttttaaaGCCCCagtagtacttatttattagatatagGAATTTATcatctaaataattaaattaggatacttcatcaccttagaattataaggttctgtttgactttttttttttcaaaattaagtttatgatattttcttatttaatgacagcttatttacattataggatgtgtttttataagttgtttacattttaagacttttatttaaaaaaaacaaatgttacatacATGCTGTTtgttatatggaatgcaaaaactttgaagctcaatatctcaaaatcattcagagcgcagatagaaccttataattccaaggtgacaactTATTCTTTACATATTTGTTTCAGTATAGTGACTTATAATCATAATGTTGTTACTAGTAACAAATCTAAAATATCTGGCATTTTGCCACATAAATACTACAATGCAAAACCCAAtcagttaaggtaacttaaaccatttgaggtaactgattgcaacaaaccatttaagttcaaaaactaatcctaatgagtactgtgaacttaagcacagtaaaacccaacaaatgaagagaactcaaaccaactgagtactgtaaaacccaataagttaaggcaactcaaaccattggaggaaaccgattgctacaatttttctttttttacaaataatctatatgagtacttactccatttaatttgaagtaatgagctatttaattaactcattaccttcatgacttagttcaaaactcttttcaaatgagtagaattaactttcagtcaattttgagttaactacactcatttcatttgataaagttgactgttgtgttttgcagtgtagtatttactatattgTCACTTgcaactatttaaataaatactagtGGTGATTTGTTAGgtaaaataatattcaaaagagattcagtaaataaataatagactGCGTTTGTGTGGAAAAATGTTAATCATGCTGTAATAATGTAACTTTTACCAGATTATTAGATTTCAAAAACATaatctaagctttttttaatcattatataaTGCACATTTAATCAAAACTACCCAGCACTATTTACAATATCAGTTAGCAAAACAGTAGCATGTTTTTGTAcacatttaaatgacaaatggCTGTGCTCACttctactgtaaaaataatattgcCAATAACGGACGTTATAGTACAAAATATACTCAAAACAATGAATTCAGGAGGAAATTAACACACTCAGCTTGTCAACAAGTTCTTTGGATAAGTCATggtaaatatacaaatacatatatcCAACCTGTTTTATTGCCAGGTCCATTTAAATACCAGCCTTACACaggaaaaactgaagaaaaaaacagtGTTCTTGTAATGTTTTGGGTTTATGATGAAACACTAAATCTCTTTATTTGTTGATTAATGCAATAAGACCAATACACAGAGTGTTATTGCCAAGAAACTCATGTTAATTGTATTAACTAGTTAGCTGTATTGAAGGAGAGGGAGTGAGATGTCTTGAATCTCAGGTTCTTTTTGATAAAGTTTAATGCTGTGTGATATATTTTCACTTTTCTGAAAACTAAATGAGGTACTACtttttattcaaatgtattttctGTCATTCAGTGTCTATACTTTCTCCTAAAAGGCAGAAGTTCAGAACTATTACGTCTGTGACTATTCTAAGTGAAAGGGTGCTTGACTTTCTGTTGCACTTTAAAGTCTGGTTTCAGAACACAACATGACTGAGTGCATCATCTGGCTTATTTTTGCATACTCTCTGCTCCCACCGCTTGTATTATATCTGTACTGTATCTTTATCAGTCAAACACTGGACATTCATGCAAATGTCATTTGTACTTTGGGATTTTATTCTTGTCCTAAATGAACTTTTTCAGTCTGTTT

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006120 mitochondrial electron transport, NADH to ubiquinone biological_process
GO:0006123 mitochondrial electron transport, cytochrome c to oxygen biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0019646 aerobic electron transport chain biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:1990542 mitochondrial transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0006839 mitochondrial transport biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0071010 prespliceosome cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005751 mitochondrial respiratory chain complex IV cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0070069 cytochrome complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0045277 respiratory chain complex IV cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0071004 U2-type prespliceosome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050317 True 3191 lncRNA 0.33 3 34140363 34147094

Neighbor

gene id symbol gene type direction distance location
XLOC_025524 aldh3b1 coding upstream 11411 34120191 ~ 34128952 (+)
XLOC_025522 NA coding upstream 26662 34107202 ~ 34113701 (+)
XLOC_025523 si:dkey-204f11.3 coding upstream 27686 34111957 ~ 34112677 (+)
XLOC_025521 BX649502.3 coding upstream 61193 34078200 ~ 34079170 (+)
XLOC_025520 alkbh7 coding upstream 218213 33918510 ~ 33922150 (+)
XLOC_025526 carm1 coding downstream 2243 34149337 ~ 34172214 (+)
XLOC_025527 BX649502.1 coding downstream 11781 34158875 ~ 34159072 (+)
XLOC_025528 timm29 coding downstream 33741 34180835 ~ 34182587 (+)
XLOC_025529 dre-mir-181c coding downstream 50600 34197694 ~ 34197771 (+)
XLOC_025530 NA coding downstream 63799 34210893 ~ 34217224 (+)
XLOC_025429 BX649540.1 misc upstream 3891327 30248739 ~ 30249036 (+)
XLOC_025517 NA non-coding upstream 566847 33560092 ~ 33573516 (+)
XLOC_025516 CR396582.2 non-coding upstream 690144 33450100 ~ 33450219 (+)
XLOC_025514 CR396582.1 non-coding upstream 732653 33407588 ~ 33407710 (+)
XLOC_025533 NA non-coding downstream 102088 34249182 ~ 34250243 (+)
XLOC_025534 NA non-coding downstream 106463 34253557 ~ 34253946 (+)
XLOC_025513 CABZ01012962.1 non-coding upstream 720699 33384282 ~ 33419664 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location