G638088



Basic Information


Item Value
gene id G638088
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 66680201 ~ 66680773 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU725257
gttctacatatagttagaaagatacactgcttctttatgcaatcgctttgttacgtttatttttaacgttacagaaatcgcacactattcaatattctgagacggcgctcagatataagctacatttctccgtaatgttggagtcaacagaaacacagatttcagcataaatattcccttaccttcgatggtcttcgttcagaatgttctggaaaggttcatacttacccaatacatcgtttggtttcaagtcttgcgtctttgtattagctactgctaataacatcagctgaaatgcacccaaaatgtcctctggtccggaaaagttgcgcatcaaaacttcaaaattacatattatatgtcgactaaacaggtcaaactaagtacaaaaccaagctttaggatgttatagacatacaaaacaattttcaattcaaccggtcattgtttgTCCTTCTTCTGAgtactggaacaaaggaatggctgtgaccaattcgcgccctaacgcacaggttttttctcgcggcacttactcaaatcactcccatagggccaattctcgcgggatttgaa

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU725257 True 573 lncRNA 0.39 1 66680201 66680773

Neighbor


gene id symbol gene type direction distance location
myorg kiaa1161 coding upstream 360994 66311011 ~ 66319207 (+)
LOC110528296 ccdc63 coding upstream 466568 66204437 ~ 66213633 (+)
LOC110528290 LOC106583572 coding upstream 565643 66049287 ~ 66114558 (+)
tacc1 LOC106586881 coding upstream 641241 66002466 ~ 66038960 (+)
ddhd2 LOC106583313 coding upstream 688341 65983543 ~ 65991860 (+)
LOC110529005 LOC106583566 coding downstream 250265 66931038 ~ 67049072 (+)
LOC110528302 LOC106583563 coding downstream 421329 67102102 ~ 67112227 (+)
LOC110528303 LOC106583562 coding downstream 441418 67122191 ~ 67130475 (+)
LOC110528306 LOC106583560 coding downstream 507103 67187876 ~ 67201857 (+)
LOC110528310 LOC106583556 coding downstream 669116 67349886 ~ 67352106 (+)
G638083 NA non-coding upstream 7347 66672632 ~ 66672854 (+)
G638078 NA non-coding upstream 10230 66669716 ~ 66669971 (+)
G638073 NA non-coding upstream 12022 66667974 ~ 66668179 (+)
G638060 NA non-coding upstream 22741 66657260 ~ 66657460 (+)
G638051 NA non-coding upstream 28885 66651108 ~ 66651316 (+)
G638090 NA non-coding downstream 902 66681675 ~ 66682206 (+)
G638092 NA non-coding downstream 2966 66683739 ~ 66683986 (+)
G638093 NA non-coding downstream 3417 66684190 ~ 66684576 (+)
G638102 NA non-coding downstream 11453 66692226 ~ 66692480 (+)
G638103 NA non-coding downstream 12350 66693123 ~ 66693334 (+)
G638011 NA other upstream 58107 66621686 ~ 66622094 (+)
G637929 NA other upstream 72457 66552588 ~ 66607744 (+)
LOC110528281 LOC106565490 other upstream 772382 65901905 ~ 65908098 (+)
G635848 NA other upstream 1349909 65329936 ~ 65330292 (+)
G635769 NA other upstream 1628045 65051644 ~ 65052156 (+)
patz1 LOC106583552 other downstream 759759 67433792 ~ 67446077 (+)
G639648 NA other downstream 1532745 68213518 ~ 68214402 (+)
LOC110528344 LOC106583528 other downstream 2073290 68568757 ~ 68790841 (+)
G640523 NA other downstream 2240853 68921626 ~ 68927219 (+)
G640895 NA other downstream 2907518 69588291 ~ 69589664 (+)

Expression


G638088 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

G638088 Expression in each Bioproject

Bar chart with 18 bars.
G638088 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network