G640974


Basic Information

Item Value
gene id G640974
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 69719850 ~ 69749885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU728461
atctgactgagcatacaagtttTGCCAgaagctcttcgttgtgcgtcaagcattgcgctgtttatgacttcaagcctatcaactcccgagatgaggctggtgttagtgcacgctaatagcgtttcaaacataaCTCgttctgagccttctagtagttgttccccttgctctgcatgggtaacgctgcttcaatggtggctgttgtcgttgtgttgctggttcgagcccagggaggagcgaggagagagactgaagctaaattgttacactggcaatactaaagtgcctataagaacatccaatagtcaaaggtatatgaaatacaaatggtatagagggaaatagtcctatgattcctataataactacaacctaaaacttcttacctgggaatattgataagactcatgttaaaaggaaccaccagctttcatatgttctcatgttctgagcaaggaactgaaacgttagctttcttacatagcacatattgcacttttacttctccaacactttgtttttgcattatttaaaccaaattgaacatgtttcattatttacttgaggctaaattgattttattgatgtattatattaagttaaaataaatgtttattcagtattgttgtaattgtcattattacaacaaaaaaataaaaataatcggccgattaatcagtatcggcttttttggtcctccaataatcggtatcggcgttgaaaaatcataatcggtcgacctctagtctggagTTTGTGTcctgttaacagtgtccaaagaagggccagaagtatacagaatggtgttgtctgcgtagaggtggatcagagactcaccagcagcaagagtggcatcattgatgtatacagagaagagataaaagagaagagaagtaaaagaaagagaagagaagtaaaagaaagagaagagaagtaaaagaaagagaagagaagtaaaagaaagagaagagaagtaaaagaaagagaagagaagtaaaagaaagagaagagaagtataagaaagagaagagaagtataagaaagagaagagaagtatAAGAAAGAGAAgataagaaagagaagagaagaaagagaagagaagtaaaagaaagagaagagaagtagaagaaagagaagagaagtaaaagaaagaagagaagtaaaagaaagagaagagaagtataagagaagaaagagaagagaagtaaaagaaagagaagagaagtaaaagaaagagaagagaagtaaaagaaagagaagagaagtaaaagaaagagaagagaagtaaaagaaagagaagagaagtaaaagaaagagaagagaagtaaAAGAAAGAGAAGTAAAAGAGAAGTATAAGAAAGAAGAGAAGtataagaaagagaagagaagtataagagaagagaagagaagaaagagaagagaagtaaaagaaagagaagagaagtaaaagaaagagaagagaagtaaaagaaagagaagagaagtaaAAGAAAGAGAAGTAAAAGAGAAGTATAAGAAAGAAGAGAAGTATAAGAAAGAAGAGAAGtataagaaagagaagagaagaaagagaagagaagtaaaagaaagagaagagaagtaaaagaaagagaagagaagtaaaagaaagagaagagaagtaaaagaaagagaagaaagagaagtaaaagaaagagaagagaagaaagagaagagaagaaagagaaggagaagaaagagaagtaaaagaaggagaagagagaagagaagtaaaagaaggagaagagagaagagaagtaaaagaaggagaagagagaagagaagtaaaagaaggagaagagagaagagaagtaaaagaaggagaagagggaagagaagtaaaaggagaagaaagaagagaagtaaaagaaggagaagagagaagagaagtaaaagaaggagaagagagaagagaaataaaagaaagaaagagaagagaagtaaaagtgaaagagaagagaagtaaaagtgaaagtcacccagtaaaatactacttgagtaaaatactaaaagtatttggttttaaataaatgtaattgctaaaatatacttaagtgccaaaagtaaaagtataaatcatttaaaattccttatataaagcaaaccagatggcatcattttcttgtttttatttatttacggatagccagggccATGGTCCAACactaagcatgtgtttagtgagtccaccagatcagaggaagtagggatgaccagggatgttctattGATAAATGTGTAAATTAGACAATTTTTCTTTCCTGCTAAGCAtc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU728461 True 2291 lncRNA 0.34 4 69719850 69749885
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Neighbor

gene id symbol gene type direction distance location
LOC110528360 NA coding upstream 278986 69435858 ~ 69441391 (+)
il19l il-20 coding upstream 345487 69371558 ~ 69374363 (+)
LOC110528354 LOC106583520 coding upstream 358354 69348686 ~ 69361496 (+)
LOC110529008 NA coding upstream 457664 69261122 ~ 69262186 (+)
LOC110528349 rrp9 coding upstream 676985 69037711 ~ 69042865 (+)
LOC110528365 LOC106583502 coding downstream 53098 69802983 ~ 69811294 (+)
LOC110529011 LOC106583501 coding downstream 63014 69812899 ~ 70034808 (+)
LOC110528366 got1a coding downstream 299406 70049291 ~ 70054686 (+)
kiss1 NA coding downstream 307599 70057484 ~ 70063539 (+)
LOC110528364 LOC106583499 coding downstream 560335 70310220 ~ 70483971 (+)
G640923 NA non-coding upstream 81657 69637640 ~ 69638193 (+)
G640867 NA non-coding upstream 142158 69572444 ~ 69577692 (+)
G640842 NA non-coding upstream 155416 69562985 ~ 69564434 (+)
G640841 LOC106583506 non-coding upstream 161044 69554202 ~ 69558806 (+)
G640891 NA non-coding upstream 168668 69550709 ~ 69551182 (+)
G640993 NA non-coding downstream 6235 69756120 ~ 69763336 (+)
G640994 NA non-coding downstream 9236 69759121 ~ 69763542 (+)
G640996 NA non-coding downstream 14198 69764083 ~ 69766381 (+)
G640997 NA non-coding downstream 17987 69767872 ~ 69768163 (+)
G641047 NA non-coding downstream 111304 69861189 ~ 69863957 (+)
G640895 NA other upstream 130186 69588291 ~ 69589664 (+)
G640523 NA other upstream 792631 68921626 ~ 68927219 (+)
LOC110528344 LOC106583528 other upstream 962804 68568757 ~ 68790841 (+)
G639648 NA other upstream 1505448 68213518 ~ 68214402 (+)
patz1 LOC106583552 other upstream 2273773 67433792 ~ 67446077 (+)
LOC110528363 LOC106583503 other downstream 41454 69708160 ~ 69796822 (+)
G642308 NA other downstream 662233 70412118 ~ 70413821 (+)
LOC110528375 LOC106583493 other downstream 984374 70734084 ~ 70786210 (+)
LOC110528378 LOC106583488 other downstream 1065394 70809354 ~ 70824711 (+)

Expression

G640974 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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G640974 Expression in each Bioproject

Bar chart with 21 bars.
G640974 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network