XLOC_002555


Basic Information

Item Value
gene id XLOC_002555
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6036881 ~ 6037746 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005991
gctggggtccgcaggtctgatggactgccagtaagagatCTTCCCTCCTTCAttcagacatgctttagaaatgttgctgtcagtaaatgtcatgtgtcTCCATCAAgcaggtgtgatttactctgctttttCTGTCTGCAGGTGAACATCAAGTACATGTTGAAGGACCGGACCCCCGAGACactgaaagttgtatgttttgTGTGAGTCTATGGTGTTTGATTCAGTCctggatataatggagggtttgtcctgcaggaCGGTCAGGGTTGGCTGCCGCTTGAGGTGGCATTGATGACCCGCGTCACTTCAGCTCCTGctgccccagtgtcctgcagctgctggactggtttgaccgtcccagacTGTACGTCTTGATCCTGGACCGTCTGGCTCCTTGTCAAGATCTTCAGAGCTTCTGtgagaacggctgtctggatgagcgTCTGGCCAAGAAAGTACTGGTGCAGCTGATGGCGGCGCTGAAACACTGCGAGAGCTGCGGCGTCCTGCACCAGGTCGTCAAGCCACAGAACCTGCCAGACAACCTCCacaggacatcaagctgctggacttcggctgtggagatctgctgaagcgaTCGGCTGCGTTTTGCAGGTGGGTTTGAGTTACAAAAGGGAACGTTCTGTTGATGTCTGTGAACGTCTGCTGATCAACTGAAGGGAATTTGTTTGTgcagatgtttgtggtcttcttGTGTCTCTCGGGCACTCCTGCTGAGTGGTTTCGCAGACATCTCTACAATGCCACTCAGCTACAGTGTGGTCAGAAGGAGTGACGCTCCTCTGTGACTGTTTCCCCTTCAGAGGCGCACGgagggtcacgtccagaagcagactgacctt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005991 True 866 lncRNA 0.53 1 6036881 6037746

Neighbor

gene id symbol gene type direction distance location
XLOC_002554 CABZ01032180.1 coding downstream 86303 5950463 ~ 5950578 (-)
XLOC_002553 si:ch211-281k19.2 coding downstream 179333 5855259 ~ 5857548 (-)
XLOC_002552 si:ch211-281k19.2 coding downstream 181756 5852359 ~ 5855125 (-)
XLOC_002551 ankrd55 coding downstream 188977 5823759 ~ 5847904 (-)
XLOC_002550 NA coding downstream 215297 5788620 ~ 5821584 (-)
XLOC_002556 NA coding upstream 351523 6389269 ~ 6409797 (-)
XLOC_002557 ca9 coding upstream 379610 6417356 ~ 6454386 (-)
XLOC_002558 BX005434.1 coding upstream 434960 6472706 ~ 6472832 (-)
XLOC_002559 dcp2 coding upstream 435346 6473092 ~ 6494070 (-)
XLOC_002560 chd1 coding upstream 483630 6521376 ~ 6588793 (-)
XLOC_002547 CU466285.1 non-coding downstream 509517 5525393 ~ 5527364 (-)
XLOC_002546 NA non-coding downstream 812939 5221915 ~ 5223942 (-)
XLOC_002540 NA non-coding downstream 1114830 4919323 ~ 4922051 (-)
XLOC_002561 NA non-coding upstream 572411 6610157 ~ 6611065 (-)
XLOC_002562 BX511100.5 non-coding upstream 573329 6611075 ~ 6639167 (-)
XLOC_002563 BX511100.6 non-coding upstream 623313 6661059 ~ 6662868 (-)

Expression


Co-expression Network